Hg_chrom3_TN10mRNA_5292
Organism: Heterodera glycines Gene Locus: chr3:5587095-5587868 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.026 | 1.337 | 0.254 | 1.103 | 1.885 | 0.175 | 1.103 | 1.634 | 1.292 | 1.448 | 0.865 | 2.247 | 0.283 | 0.45 | 0.735 | 0.844 | 1.337 | 0.0 | 1.081 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5017
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.590
|
0.680
|
0.095
|
0.583
|
0.265
|
0.086
|
0.078
|
0.037
|
0.190
|
0.348
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000550
|
2.000
|
5.000
|
Hsc_gene_18968.t1;Hsc_gene_18968.t2;Hsc_gene_22234.t1;Hsc_gene_22234.t2;Hsc_gene_22234.t3
|
— | — | — |
KAI3421121.1 hypothetical protein GPALN_014748 [Globodera pallida]
|
WP_298223795
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
15772.130
|
5.675
|
-1.500
|
27.941
|
13.971
|
50.000
|
50.000
|
13.971
|
13.971
|
41.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
44.424
|
6.562
|
42.368
|
19.069
|
1.811
|
1.505
|
1.212
|
1.118
|
81.509
|
105.606
|
95.278
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.458
|
1.400
|
-1.041
|
-3.426
|
— | — | — | — | — | — |
-5.768
|
— | — |
No JSON data available for plots.