Hg_chrom3_TN10mRNA_5295
Organism: Heterodera glycines Gene Locus: chr3:5623413-5624947 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 0.93 | 0.97 | 0.153 | 1.556 | 0.57 | 0.741 | 0.667 | 0.988 | 1.441 | 1.414 | 1.046 | 1.728 | 0.598 | 0.635 | 0.889 | 0.874 | 0.741 | 2.051 | 1.438 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5020
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.327
|
0.411
|
0.024
|
0.773
|
0.299
|
0.113
|
0.165
|
0.018
|
0.150
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000300
|
7.000
|
2.000
|
Hsc_gene_13553.t1;Hsc_gene_19336.t1
|
— | — |
P46428.4 Glutathione S-transferase [Anopheles gambiae]
|
KAH7695597.1 Glutathione S-transferase 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.868|GO:0003674_0.640|GO:0009987_0.618|GO:0005575_0.597|GO:0110165_0.593|GO:0003824_0.564|GO:0050896_0.558|GO:0005622_0.546|GO:0005737_0.539
|
IPR004045+6-95_9-88+|IPR004046+121-218+|IPR010987+97-225+|IPR036249+7-92+|IPR036282+93-222+|IPR040079+6-223+|IPR050213+8-221+
|
— |
PF02798+9-88+Glutathione_S-transferase,_N-terminal_domain|PF14497+121-218+Glutathione_S-transferase,_C-terminal_domain
|
— |
PTHR11571+8-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
25774.360
|
5.199
|
-3.500
|
28.444
|
15.111
|
46.222
|
53.778
|
13.778
|
14.667
|
44.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2647.059
|
7412.229
|
2441.622
|
1566.338
|
2957.040
|
3296.750
|
2477.574
|
3014.080
|
612.131
|
2434.674
|
1653.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.832
|
-2.380
|
-0.531
|
0.885
|
0.172
|
-0.402
|
— | — |
-2.104
|
1.509
|
— | — | — |
No JSON data available for plots.