Hg_chrom3_TN10mRNA_5297
Organism: Heterodera glycines Gene Locus: chr3:5628511-5631308 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.082 | 0.987 | 0.802 | 1.227 | 0.497 | 0.461 | 2.326 | 1.034 | 1.309 | 0.881 | 3.42 | 1.615 | 0.82 | 0.791 | 0.443 | 1.398 | 0.94 | 1.789 | 0.798 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5022
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
32-72
|
0.880
|
— | — | — | — |
0.000
|
— | — |
0.855
|
0.102
|
0.004
|
0.328
|
0.166
|
0.049
|
0.147
|
0.004
|
0.097
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003558
|
2.000
|
1.000
|
Hsc_gene_21393.t1
|
— | — |
O88874.3 Cyclin-K [Mus musculus]
|
KAF7632154.1 CYCLIN domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357|GO:0016538
|
GO:0008150_0.829|GO:0005575_0.708|GO:0110165_0.663|GO:0009987_0.646|GO:0005622_0.572|GO:0016020_0.553|GO:0065007_0.540|GO:0003674_0.521|GO:0050789_0.520
|
IPR006671+29-136+|IPR013763+38-130_143-240+|IPR036915+5-138_139-240+|IPR043198+5-242+
|
SM00385+38-130_143-240+
|
PF00134+29-136+Cyclin,_N-terminal_domain
|
— |
PTHR10026+5-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
251-258
|
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
29888.590
|
6.220
|
-2.000
|
27.132
|
15.504
|
45.349
|
54.651
|
14.341
|
12.791
|
45.349
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
672.436
|
742.561
|
730.451
|
701.385
|
657.004
|
540.953
|
839.379
|
691.411
|
713.083
|
568.417
|
630.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.255
|
-0.219
|
— |
-0.126
|
-0.266
|
0.644
|
0.250
|
0.422
|
— | — | — | — | — |
No JSON data available for plots.