Hg_chrom3_TN10mRNA_5298
Organism: Heterodera glycines Gene Locus: chr3:5633542-5635772 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 2.092 | 0.748 | 0.177 | 1.028 | 0.791 | 0.734 | 1.028 | 1.6 | 1.181 | 0.584 | 0.605 | 1.143 | 1.285 | 0.997 | 1.138 | 0.674 | 1.13 | 1.186 | 1.361 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5023
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.733
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.150
|
0.122
|
0.024
|
0.257
|
0.170
|
0.157
|
0.192
|
0.013
|
0.464
|
0.845
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003559
|
2.000
|
1.000
|
Hsc_gene_1234.t1
|
Hsc_gene_1234.t1
|
— |
G5EF96.1 Netrin receptor unc-40 [Caenorhabditis elegans]
|
KAI1708782.1 fibronectin type III domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.876|GO:0005575_0.842|GO:0110165_0.838|GO:0009987_0.780|GO:0003674_0.734|GO:0032501_0.623|GO:0016020_0.615|GO:0071840_0.599|GO:0016043_0.597|GO:0032502_0.585|GO:0048856_0.571|GO:0065007_0.559|GO:0007275_0.550|GO:0071944_0.549|GO:0050789_0.543|GO:0048731_0.541|GO:0005886_0.520|GO:0050794_0.510|GO:0007399_0.506
|
IPR003961+77-165_77-168_78-170_79-179_182-268_182-282_185-277_188-269_283-365_284-368_285-378_292-371+|IPR013783+66-176_178-276_277-378+|IPR036116+75-186_182-371+
|
SM00060+77-165_182-268_283-365+
|
PF00041+78-170_188-269_292-371+Fibronectin_type_III_domain
|
G3DSA:2.60.40.10:FF:000028+72-175+Neuronal_cell_adhesion_molecule
|
PTHR44170+76-169+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-389
|
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
43567.190
|
6.103
|
-2.000
|
21.080
|
12.339
|
45.244
|
54.756
|
10.797
|
10.283
|
52.699
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
164.647
|
362.422
|
161.651
|
150.398
|
199.751
|
408.588
|
176.254
|
95.442
|
29.983
|
114.904
|
78.509
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.394
|
-1.406
|
— |
0.379
|
1.047
|
-1.204
|
-2.203
|
1.027
|
— | — | — | — | — |
No JSON data available for plots.