SCN Proteipedia

Hg_chrom3_TN10mRNA_5299

Organism: Heterodera glycines Gene Locus: chr3:5640136-5647923 Feature type: polypeptide

Protein Sequence

Length: 1,373

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.813	1.118	1.059	0.502	1.08	1.326	0.789	1.966	0.89	0.955	0.618	1.928	1.356	1.121	1.501	0.905	0.872	0.85	1.121	1.028	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5024	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.362

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRVK,KRRRR	—	—	—	—	—	—	0.000	—	—	0.140	0.043	0.007	0.250	0.195	0.504	0.303	0.050	0.817	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001948	1.000	3.000	Hsc_gene_1233.t1;Hsc_gene_1233.t2;Hsc_gene_1233.t3	Hsc_gene_1233.t1;Hsc_gene_1233.t2	—	Q9BMN8.1 Tyrosine-protein phosphatase Lar-like [Caenorhabditis elegans]	KAH7726342.1 receptor-type tyrosine-protein phosphatase S-like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0005515\|GO:0006470\|GO:0016311	GO:0008150_0.867\|GO:0005575_0.840\|GO:0110165_0.840\|GO:0003674_0.812\|GO:0009987_0.796\|GO:0016020_0.743\|GO:0071944_0.714\|GO:0005886_0.704\|GO:0065007_0.677\|GO:0050789_0.626\|GO:0050794_0.616\|GO:0003824_0.585\|GO:0032501_0.572\|GO:0016787_0.555\|GO:0140096_0.550\|GO:0050896_0.535\|GO:0016788_0.524\|GO:0004721_0.515\|GO:0016791_0.515\|GO:0042578_0.515\|GO:0005488_0.502	IPR000242+804-1068_805-1066_828-1064_861-868_877-897_963-980_1002-1020_1033-1048_1049-1059_1097-1370_1098-1368_1124-1366+\|IPR000387+986-1057_1283-1359+\|IPR003595+964-1065_1255-1367+\|IPR003961+144-236_145-237_146-241_146-250_251-341_254-356_255-353+\|IPR013783+138-249_250-359+\|IPR016130+1307-1317+\|IPR029021+779-1075_784-1066_1070-1369_1076-1372+\|IPR036116+145-334+\|IPR050348+417-1081+	SM00060+144-236_251-341+\|SM00194+804-1068_1097-1370+\|SM00404+964-1065_1255-1367+	PF00041+146-241+Fibronectin_type_III_domain\|PF00102+828-1064_1124-1366+Protein-tyrosine_phosphatase	G3DSA:3.90.190.10:FF:000088+784-1074+Receptor_protein-tyrosine_phosphatase_LAR\|G3DSA:3.90.190.10:FF:000102+1077-1373+Receptor-type_tyrosine-protein_phosphatase	PTHR19134+417-1081+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-166;430-524;663-710	3.000	167-429;525-662;711-1373	2fh7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.686	156661.350	7.010	15.000	27.677	13.765	49.308	50.692	15.368	12.309	48.798

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	1343.082	1739.720	1561.850	1255.975	1557.366	2490.323	1271.788	957.247	300.459	1587.789	1036.076

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.385	-0.607	-0.206	0.278	0.692	-0.960	-1.483	0.551	—	—	—	—	—

No JSON data available for plots.

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