Hg_chrom3_TN10mRNA_5302
Organism: Heterodera glycines Gene Locus: chr3:5653764-5658176 Feature type: polypeptideProtein Sequence
Length: 1,139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.47 | 1.674 | 0.814 | 0.484 | 1.771 | 1.283 | 0.596 | 0.922 | 1.327 | 1.388 | 1.889 | 2.066 | 1.122 | 0.456 | 0.878 | 0.765 | 0.864 | 0.519 | 1.148 | 0.568 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5027
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL,KKKRK,RQLKRKM,RKLAKTMAKSETERQLKRK,KGKATKKKNRKKKIKQKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.508
|
0.166
|
0.006
|
0.595
|
0.129
|
0.093
|
0.171
|
0.019
|
0.149
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001204
|
2.000
|
3.000
|
Hsc_gene_1232.t1;Hsc_gene_1232.t2;Hsc_gene_1232.t3
|
— | — | — |
KAF7637504.1 PAP_central domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.699|GO:0110165_0.698|GO:0005622_0.660|GO:0016020_0.646|GO:0043226_0.630|GO:0043229_0.608|GO:0008150_0.577|GO:0003674_0.563|GO:0043227_0.561|GO:0043231_0.542
|
IPR007012+831-982+
|
— |
PF04928+831-982+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+827-1129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-296
|
1.000
|
297-1139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
132650.360
|
9.129
|
29.500
|
33.714
|
9.306
|
56.541
|
43.459
|
18.613
|
15.101
|
38.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
661.256
|
5.136
|
37.025
|
112.795
|
45.091
|
10.118
|
10.864
|
17.147
|
710.395
|
2270.885
|
1602.103
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.623
|
4.322
|
1.713
|
-1.357
|
-2.140
|
— | — | — | — |
-2.481
|
-5.505
|
— | — |
No JSON data available for plots.