Hg_chrom3_TN10mRNA_5306
Organism: Heterodera glycines Gene Locus: chr3:5678314-5680800 Feature type: polypeptideProtein Sequence
Length: 555
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.461 | 1.592 | 0.655 | 0.497 | 1.351 | 1.571 | 0.515 | 1.351 | 1.321 | 1.534 | 1.529 | 1.06 | 1.952 | 0.693 | 0.699 | 0.901 | 0.709 | 0.737 | 1.247 | 0.742 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5031
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.648
|
0.158
|
0.008
|
0.500
|
0.166
|
0.134
|
0.132
|
0.030
|
0.149
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001204
|
2.000
|
3.000
|
Hsc_gene_1232.t1;Hsc_gene_1232.t2;Hsc_gene_1232.t3
|
Hsc_gene_1227.t1;Hsc_gene_1227.t2
|
— | — |
XP_037915138.1 poly(A) polymerase gamma-like [Hermetia illucens]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.692|GO:0110165_0.691|GO:0005622_0.642|GO:0016020_0.637|GO:0043226_0.610|GO:0043229_0.601|GO:0043227_0.562|GO:0008150_0.557|GO:0003674_0.555|GO:0043231_0.555
|
IPR007012+260-403+|IPR043519+30-219+
|
— |
PF04928+260-403+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+126-549+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-555
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
64751.560
|
9.135
|
17.500
|
27.928
|
13.874
|
51.532
|
48.468
|
16.216
|
11.712
|
39.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
220.104
|
5.822
|
88.970
|
107.261
|
25.861
|
4.269
|
5.183
|
11.528
|
971.968
|
140.643
|
496.925
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.707
|
4.067
|
0.378
|
-2.082
|
-2.586
|
— |
1.330
|
— | — | — | — | — | — |
No JSON data available for plots.