Hg_chrom3_TN10mRNA_5309
Organism: Heterodera glycines Gene Locus: chr3:5695842-5698977 Feature type: polypeptideProtein Sequence
Length: 558
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 1.042 | 0.717 | 0.185 | 1.105 | 2.114 | 0.576 | 0.806 | 0.637 | 1.211 | 0.353 | 1.687 | 1.294 | 1.62 | 1.244 | 1.946 | 1.175 | 0.489 | 0.138 | 0.316 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5034
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.946
|
0.091
|
0.012
|
0.296
|
0.040
|
0.019
|
0.017
|
0.060
|
0.039
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007577
|
1.000
|
1.000
|
Hsc_gene_1223.t1
|
— | — |
Q22002.2 NAB transcription cofactor mab-10 [Caenorhabditis elegans]
|
KAH7727507.1 NGFI-A-binding-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0005634|GO:0006355|GO:0045892
|
GO:0008150_0.855|GO:0009987_0.825|GO:0032501_0.732|GO:0005575_0.729|GO:0110165_0.727|GO:0032502_0.725|GO:0048856_0.725|GO:0007275_0.698|GO:0005622_0.684|GO:0065007_0.683|GO:0050789_0.676|GO:0016020_0.675|GO:0043226_0.651|GO:0048513_0.649|GO:0043229_0.635|GO:0043227_0.601|GO:0043231_0.574|GO:0003674_0.549|GO:0005488_0.549|GO:0005634_0.535|GO:0005515_0.501
|
IPR006988+60-135+|IPR006989+365-477+|IPR013761+54-135_65-105+|IPR038398+356-492+|IPR039040+42-544+
|
— |
PF04904+60-135+NAB_conserved_region_1_(NCD1)|PF04905+365-477+NAB_conserved_region_2_(NCD2)
|
— |
PTHR12623+42-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;211-411;485-558
|
2.000
|
57-210;412-484
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
60974.680
|
5.241
|
-7.500
|
20.609
|
7.527
|
54.122
|
45.878
|
10.036
|
10.573
|
54.480
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
313.784
|
39.006
|
28.610
|
25.430
|
59.312
|
1295.280
|
336.981
|
1808.651
|
4.738
|
21.776
|
14.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.679
|
-0.755
|
— |
1.192
|
4.461
|
-1.930
|
— |
-2.277
|
— | — | — | — | — |
No JSON data available for plots.