Hg_chrom3_TN10mRNA_5312
Organism: Heterodera glycines Gene Locus: chr3:5705915-5708710 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.176 | 1.016 | 0.711 | 0.793 | 0.958 | 1.179 | 1.013 | 1.149 | 1.788 | 1.118 | 0.697 | 1.623 | 1.596 | 0.663 | 0.798 | 1.215 | 0.791 | 0.906 | 0.354 | 0.473 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5037
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.658
|
0.247
|
0.013
|
0.560
|
0.121
|
0.268
|
0.165
|
0.182
|
0.054
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007580
|
1.000
|
1.000
|
Hsc_gene_1219.t1
|
Hsc_gene_1219.t1
|
— |
P34480.1 N-acetylglucosamine-6-phosphate deacetylase [Caenorhabditis elegans]
|
KAH7731686.1 N-acetylglucosamine-6-phosphate deacetylase-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006044|GO:0008448|GO:0016787|GO:0016810
|
GO:0008150_0.938|GO:0008152_0.785|GO:1901135_0.703|GO:0009987_0.677|GO:0006040_0.670|GO:0003674_0.662|GO:0009056_0.615|GO:0046348_0.578|GO:1901136_0.578|GO:0005575_0.575|GO:0003824_0.570|GO:0044237_0.563|GO:0044281_0.524
|
IPR003764+24-433+|IPR006680+77-418+|IPR011059+31-424_35-426+|IPR032466+81-400+
|
— |
PF01979+77-418+Amidohydrolase_family
|
— |
PTHR11113+24-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-435
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
46974.850
|
6.492
|
0.000
|
20.460
|
10.115
|
42.759
|
57.241
|
10.805
|
9.655
|
51.954
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
428.170
|
55.159
|
205.753
|
112.314
|
130.664
|
89.953
|
253.565
|
137.945
|
101.658
|
1427.494
|
859.279
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.671
|
0.888
|
-0.766
|
— |
-0.524
|
1.506
|
— |
1.022
|
-3.925
|
— |
-3.212
|
— | — |
No JSON data available for plots.