Hg_chrom3_TN10mRNA_5315
Organism: Heterodera glycines Gene Locus: chr3:5712641-5715991 Feature type: polypeptideProtein Sequence
Length: 813
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.973 | 1.373 | 1.096 | 0.339 | 1.251 | 1.072 | 0.542 | 1.353 | 1.175 | 1.097 | 0.969 | 2.098 | 1.572 | 0.757 | 1.381 | 0.949 | 0.625 | 0.69 | 1.325 | 0.977 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5040
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRRR,KKKKRSRS,RKMLMFHNKCIDERTRAK
|
— | — | — | — |
1-25
|
0.658
|
0.907
|
0.000
|
0.000
|
0.278
|
0.374
|
0.011
|
0.275
|
0.086
|
0.216
|
0.174
|
0.058
|
0.226
|
0.858
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007583
|
1.000
|
1.000
|
Hsc_gene_1216.t1
|
Hsc_gene_1216.t1
|
— |
Q18673.3 Neprilysin-1 [Caenorhabditis elegans]
|
ETN81757.1 peptidase family M13 [Necator americanus]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0008150_0.813|GO:0005575_0.773|GO:0110165_0.770|GO:0003674_0.729|GO:0016020_0.645|GO:0009987_0.616|GO:0005622_0.597|GO:0008152_0.570|GO:0003824_0.563|GO:0043226_0.516|GO:0043229_0.502
|
IPR000718+44-794_62-794_67-792+|IPR008753+67-507+|IPR018497+578-792_583-595_604-620_679-690+|IPR024079+67-794+|IPR042089+99-560+
|
— |
PF01431+578-792+Peptidase_family_M13|PF05649+67-507+Peptidase_family_M13
|
— |
PTHR11733+62-794+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
789-813
|
1.000
|
1-788
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
93942.630
|
7.196
|
8.000
|
29.397
|
13.407
|
49.938
|
50.062
|
15.867
|
13.530
|
44.772
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
4387.039
|
81.257
|
624.322
|
161.293
|
6942.140
|
40632.485
|
99.007
|
1961.587
|
33.062
|
230.214
|
145.720
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.710
|
0.851
|
-1.842
|
5.396
|
2.566
|
-8.671
|
-4.487
|
-4.160
|
— | — |
5.113
|
— | — |