SCN Proteipedia

Hg_chrom3_TN10mRNA_5317

Organism: Heterodera glycines Gene Locus: chr3:5719176-5722420 Feature type: polypeptide

Protein Sequence

Length: 622

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.748	0.785	1.286	0.499	1.876	1.319	0.785	1.286	0.822	0.934	0.828	1.797	1.161	1.175	1.083	0.712	0.712	0.974	0.866	1.324	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5042	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PKKRTSIRRKKFS	—	—	—	—	—	—	0.000	—	—	0.447	0.169	0.032	0.753	0.138	0.244	0.149	0.016	0.261	0.084

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007585	1.000	1.000	Hsc_gene_1214.t1	Hsc_gene_1214.t1;Hsc_gene_1214.t2	—	Q7JP68.1 cAMP-dependent protein kinase, catalytic subunit-like [Caenorhabditis elegans]	KAI1716585.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	-0.070

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.949\|GO:0009987_0.890\|GO:0003674_0.862\|GO:0003824_0.862\|GO:0140096_0.862\|GO:0016740_0.854\|GO:0016772_0.848\|GO:0004672_0.839\|GO:0016301_0.839\|GO:0016773_0.839\|GO:0005575_0.816\|GO:0110165_0.809\|GO:0065007_0.796\|GO:0004674_0.794\|GO:0050789_0.790\|GO:0005622_0.781\|GO:0050794_0.745\|GO:0005488_0.691\|GO:0016020_0.630\|GO:0005737_0.629\|GO:0050896_0.627\|GO:0051716_0.613\|GO:0036094_0.598\|GO:0043167_0.598\|GO:0007154_0.593\|GO:0023052_0.587\|GO:0032502_0.582\|GO:0008152_0.578\|GO:0019538_0.576\|GO:0043170_0.576\|GO:0044238_0.576\|GO:0007165_0.570\|GO:0043168_0.569\|GO:0000166_0.566\|GO:0097159_0.566\|GO:1901265_0.566\|GO:1901363_0.566\|GO:0017076_0.559\|GO:0071840_0.552\|GO:0032553_0.550\|GO:0097367_0.550\|GO:0016043_0.549\|GO:0048856_0.549\|GO:0032555_0.548\|GO:0048519_0.544\|GO:0044237_0.540\|GO:0043226_0.536\|GO:0030554_0.527\|GO:0032559_0.527\|GO:0032501_0.525	IPR000719+316-569_320-569+\|IPR000961+570-622+\|IPR008271+435-447+\|IPR011009+314-609+\|IPR017441+322-345+	SM00133+570-622+\|SM00220+316-569+	PF00069+320-569+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000210+399-589+Non-specific_serine/threonine_protein_kinase	PTHR24353+128-609+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-222;260-311	2.000	223-259;312-622	3l9n_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.832	71178.450	4.455	-39.000	31.672	12.379	49.518	50.482	13.344	18.328	46.785

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	718.152	217.323	1450.242	1013.873	388.278	1102.530	171.576	2617.948	145.981	421.767	303.573

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.510	2.084	-0.409	-1.418	1.521	-2.674	1.147	-3.791	—	—	—	—	—

No JSON data available for plots.

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