Hg_chrom3_TN10mRNA_5318
Organism: Heterodera glycines Gene Locus: chr3:5723415-5728461 Feature type: polypeptideProtein Sequence
Length: 952
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.111 | 1.221 | 0.955 | 0.543 | 0.91 | 1.562 | 0.75 | 0.788 | 0.747 | 1.405 | 0.573 | 1.112 | 1.401 | 0.97 | 1.008 | 1.366 | 0.723 | 0.828 | 1.374 | 0.958 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5043
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— | — |
41-63
|
0.898
|
1-71
|
0.806
|
— | — |
0.000
|
— | — |
0.081
|
0.041
|
0.031
|
0.196
|
0.259
|
0.515
|
0.551
|
0.071
|
0.705
|
0.472
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007586
|
1.000
|
1.000
|
Hsc_gene_1213.t1
|
Hsc_gene_1213.t1
|
— |
Q18581.2 Inactive angiotensin-converting enzyme-related protein [Caenorhabditis elegans]
|
KAF7634152.1 Angiotensin-converting enzyme [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008237|GO:0008241|GO:0016020
|
GO:0008150_0.916|GO:0005575_0.742|GO:0110165_0.741|GO:0003674_0.664|GO:0009987_0.664|GO:0032501_0.632|GO:0065007_0.584|GO:0016020_0.547|GO:0003824_0.520|GO:0071944_0.512
|
IPR001548+154-852_162-782_164-781_171-772_379-406_648-675+|IPR006149+828-859+
|
— |
PF01401+164-781+Angiotensin-converting_enzyme|PF01683+828-859+EB_module
|
— |
PTHR10514+154-852+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-952
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
105534.720
|
5.309
|
-11.500
|
21.008
|
11.660
|
46.324
|
53.676
|
10.294
|
10.714
|
52.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
1269.206
|
524.635
|
427.392
|
282.206
|
2941.060
|
7321.498
|
461.461
|
1215.314
|
48.479
|
576.330
|
350.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.524
|
-1.031
|
-0.490
|
3.350
|
1.332
|
-3.978
|
-2.696
|
-1.255
|
-3.701
|
2.733
|
2.537
|
— | — |
No JSON data available for plots.