Hg_chrom3_TN10mRNA_5319
Organism: Heterodera glycines Gene Locus: chr3:5728861-5730056 Feature type: polypeptideProtein Sequence
Length: 252
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.415 | 1.292 | 0.866 | 4.105 | 0.794 | 1.933 | 0.85 | 1.786 | 0.529 | 0.858 | 0.661 | 0.934 | 1.543 | 1.297 | 1.377 | 1.247 | 0.651 | 0.481 | 0.611 | 0.233 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5044
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
23-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.983
|
1.000
|
0.000
|
0.000
|
0.246
|
0.214
|
0.034
|
0.279
|
0.060
|
0.084
|
0.052
|
0.018
|
0.167
|
0.910
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007587
|
1.000
|
1.000
|
Hsc_gene_1212.t1
|
Hsc_gene_1212.t1
|
— | — |
EPB71200.1 trypsin Inhibitor like cysteine rich domain protein [Ancylostoma ceylanicum]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.974|GO:0065007_0.974|GO:0050789_0.969|GO:0009987_0.966|GO:0050794_0.966|GO:0022414_0.720|GO:0019953_0.695|GO:0008037_0.674|GO:0007338_0.670|GO:0007339_0.670|GO:0009566_0.670|GO:0009988_0.670|GO:0035036_0.670|GO:2000359_0.670
|
IPR002919+89-142+|IPR036084+85-143+
|
— |
PF01826+89-142+Trypsin_Inhibitor_like_cysteine_rich_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
28184.920
|
7.680
|
8.500
|
24.206
|
10.714
|
50.000
|
50.000
|
14.683
|
9.524
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
359.617
|
21.683
|
3.992
|
3.017
|
7.796
|
134.768
|
537.979
|
33.034
|
0.000
|
1294.973
|
739.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.645
|
-2.983
|
— |
1.334
|
4.131
|
2.008
|
-2.136
|
4.169
|
-11.125
|
— |
-6.868
|
— | — |