Hg_chrom3_TN10mRNA_5323
Organism: Heterodera glycines Gene Locus: chr3:5742400-5745797 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.957 | 0.981 | 1.227 | 0.8 | 1.125 | 0.433 | 0.98 | 1.371 | 1.031 | 1.283 | 0.991 | 1.737 | 1.406 | 0.933 | 1.119 | 0.723 | 0.761 | 0.927 | 0.649 | 0.993 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5048
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.359
|
0.242
|
0.053
|
0.612
|
0.154
|
0.085
|
0.080
|
0.073
|
0.185
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007589
|
1.000
|
1.000
|
Hsc_gene_1206.t1
|
Hsc_gene_1206.t1
|
— |
Q5I0D7.1 Xaa-Pro dipeptidase [Rattus norvegicus]
|
KAI1699669.1 metallopeptidase family m24 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030145|GO:0070006
|
GO:0003674_0.777|GO:0003824_0.716|GO:0005575_0.685|GO:0110165_0.678|GO:0008150_0.660|GO:0016787_0.607|GO:0140096_0.574|GO:0008233_0.561|GO:0005622_0.523|GO:0009987_0.516
|
IPR000994+195-445+|IPR007865+12-155_17-141+|IPR029149+1-185_12-187+|IPR036005+187-473_188-469+|IPR052433+11-471+
|
SM01011+12-155+
|
PF00557+195-445+Metallopeptidase_family_M24|PF05195+17-141+Aminopeptidase_P,_N-terminal_domain
|
G3DSA:3.90.230.10:FF:000002+186-473+Xaa-Pro_aminopeptidase_3
|
PTHR48392+11-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-474
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
52817.400
|
6.441
|
-0.500
|
28.270
|
12.025
|
43.882
|
56.118
|
14.768
|
13.502
|
50.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1508.170
|
1154.761
|
1344.201
|
1891.043
|
2228.743
|
2149.792
|
3039.399
|
1881.525
|
562.245
|
1043.012
|
836.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.575
|
0.601
|
0.205
|
— |
0.511
|
-0.298
|
0.835
|
— | — | — | — | — |
No JSON data available for plots.