SCN Proteipedia

Hg_chrom3_TN10mRNA_5328

Organism: Heterodera glycines Gene Locus: chr3:5764535-5767113 Feature type: polypeptide

Protein Sequence

Length: 317

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.55	1.247	0.574	1.74	0.841	1.456	0.601	2.997	0.631	0.81	1.529	1.113	1.753	1.031	0.773	1.712	0.879	0.574	0.243	0.649	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5053	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom3_TN10mRNA_5328	7-ppJ2	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	—	—	14-37	0.982	—	—	0.000	—	—	0.774	0.146	0.004	0.274	0.067	0.041	0.083	0.008	0.044	0.046

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007592	1.000	1.000	Hsc_gene_1203.t1	Hsc_gene_1203.t1	—	Q804Q5.2 Fez family zinc finger protein 2 [Danio rerio]	XP_042303382.1 fez family zinc finger protein 2 [Sceloporus undulatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.844\|GO:0050789_0.844\|GO:0065007_0.844\|GO:0009987_0.837\|GO:0050794_0.837\|GO:0032502_0.772\|GO:0048856_0.772\|GO:0032501_0.768\|GO:0005575_0.766\|GO:0110165_0.763\|GO:0008152_0.753\|GO:0019222_0.753\|GO:0031323_0.753\|GO:0044237_0.753\|GO:0044238_0.747\|GO:0080090_0.747\|GO:0009058_0.740\|GO:0009059_0.740\|GO:0009889_0.740\|GO:0010556_0.740\|GO:0031326_0.740\|GO:0043170_0.740\|GO:0044249_0.740\|GO:0060255_0.740\|GO:0007275_0.737\|GO:0010467_0.736\|GO:0030154_0.736\|GO:0048869_0.736\|GO:0010468_0.735\|GO:0006139_0.731\|GO:0016070_0.731\|GO:0032774_0.731\|GO:0034654_0.731\|GO:0090304_0.731\|GO:0141187_0.731\|GO:0006351_0.730\|GO:0006355_0.729\|GO:0019219_0.729\|GO:0051252_0.729\|GO:2001141_0.729\|GO:0048731_0.718\|GO:0005622_0.707\|GO:0043226_0.707\|GO:0043229_0.707\|GO:0007399_0.679\|GO:0048519_0.676\|GO:0022008_0.672\|GO:0048468_0.671\|GO:0048523_0.662\|GO:0009653_0.659\|GO:0009890_0.652\|GO:0009892_0.652\|GO:0010558_0.652\|GO:0010605_0.652\|GO:0031324_0.652\|GO:0031327_0.652\|GO:0045892_0.652\|GO:0045934_0.652\|GO:0048699_0.652\|GO:0051253_0.652\|GO:1902679_0.652\|GO:0048518_0.635\|GO:0048522_0.635\|GO:0030182_0.632\|GO:0003674_0.621\|GO:0003676_0.621\|GO:0005488_0.621\|GO:0097159_0.621\|GO:0003677_0.611\|GO:0003690_0.611\|GO:0043565_0.611\|GO:1990837_0.611\|GO:0016043_0.606\|GO:0071840_0.606\|GO:0048666_0.595\|GO:0030030_0.584\|GO:0031175_0.584\|GO:0120036_0.584\|GO:0000902_0.583\|GO:0048667_0.573\|GO:0048812_0.573\|GO:0048858_0.573\|GO:0120039_0.573\|GO:0007409_0.572\|GO:0061564_0.572\|GO:0007411_0.568\|GO:0097485_0.568\|GO:0000976_0.558\|GO:0001067_0.558\|GO:0016020_0.549\|GO:0050896_0.549\|GO:0009893_0.536\|GO:0010604_0.533\|GO:0009891_0.526\|GO:0031325_0.524\|GO:0048513_0.517\|GO:0031328_0.516\|GO:0010557_0.512\|GO:0005634_0.504\|GO:0043227_0.504\|GO:0043231_0.504	IPR013087+132-151_132-154_132-159_134-154_160-182_160-187_162-182_188-210_188-215_190-210_216-238_216-243_218-238_244-266_244-271_246-266_272-295_272-300_274-295+\|IPR036236+131-182_168-225_225-281+	SM00355+132-154_160-182_188-210_216-238_244-266_272-295+	PF00096+132-151_160-182_188-210_216-238_272-295+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000251+130-155+FEZ_family_zinc_finger_2\|G3DSA:3.30.160.60:FF:000295+156-183+zinc_finger_protein_19\|G3DSA:3.30.160.60:FF:000446+240-267+Zinc_finger_protein\|G3DSA:3.30.160.60:FF:000624+211-238+zinc_finger_protein_697\|G3DSA:3.30.160.60:FF:000755+185-210+zinc_finger_protein_174	PTHR23235+187-270+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	66-125;298-317	2.000	1-65;126-297	2i13_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.861	35787.530	9.448	27.500	28.076	14.826	56.467	43.533	19.874	8.202	49.842

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	90.433	152.968	291.163	73.010	29.527	24.272	54.692	99.735	7.886	117.715	70.645

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.698	-1.204	-1.885	-1.336	—	1.184	1.939	-0.724	—	—	—	—	—

No JSON data available for plots.

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