Hg_chrom3_TN10mRNA_5329
Organism: Heterodera glycines Gene Locus: chr3:5771135-5772432 Feature type: polypeptideProtein Sequence
Length: 141
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.577 | 1.484 | 0.774 | 0.734 | 2.009 | 0.909 | 1.013 | 0.355 | 0.788 | 0.479 | 1.934 | 1.669 | 1.182 | 0.546 | 1.737 | 1.114 | 0.93 | 0.43 | 0.546 | 0.626 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_1202
|
Hg_chrom3_TN10mRNA_5329
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
RERNGKGRKKEREDERERNGKGRQKERK
|
— | — | — | — |
1-21
|
0.795
|
0.997
|
0.000
|
0.000
|
0.759
|
0.164
|
0.015
|
0.504
|
0.089
|
0.028
|
0.015
|
0.002
|
0.080
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007593
|
1.000
|
1.000
|
Hsc_gene_1202.t1
|
Hsc_gene_1202.t1
|
— | — | — |
WP_252456191
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-141
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
16148.080
|
9.886
|
7.500
|
38.298
|
7.801
|
61.702
|
38.298
|
21.986
|
16.312
|
45.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
494.654
|
14.003
|
25.589
|
139.215
|
78.874
|
17.057
|
66.843
|
25.975
|
194.667
|
1880.279
|
1157.874
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
3.176
|
2.553
|
-0.851
|
-2.195
|
1.982
|
— |
1.509
|
— | — |
-4.462
|
— | — |