Hg_chrom3_TN10mRNA_5330
Organism: Heterodera glycines Gene Locus: chr3:5772815-5775277 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.263 | 1.04 | 0.697 | 0.0 | 1.438 | 1.884 | 0.875 | 0.479 | 0.852 | 1.079 | 1.501 | 1.128 | 1.154 | 1.229 | 0.652 | 0.958 | 0.786 | 0.968 | 0.0 | 0.376 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5055
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_5330
|
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.808
|
0.042
|
0.006
|
0.346
|
0.073
|
0.048
|
0.181
|
0.004
|
0.016
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007594
|
1.000
|
1.000
|
Hsc_gene_1201.t1
|
Hsc_gene_1201.t1
|
— | — |
KAF7639869.1 G-patch domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0045292
|
GO:0008150_0.806|GO:0009987_0.750|GO:0005575_0.744|GO:0110165_0.734|GO:0005622_0.698|GO:0008152_0.666|GO:0043226_0.663|GO:0016020_0.656|GO:0044237_0.656|GO:0009058_0.651|GO:0043229_0.648|GO:0044238_0.648|GO:0043170_0.642|GO:0009059_0.633|GO:0044249_0.633|GO:0010467_0.632|GO:0006139_0.630|GO:0034654_0.614|GO:0090304_0.613|GO:0016070_0.605|GO:0141187_0.605|GO:0043227_0.603|GO:0032774_0.600|GO:0043231_0.566
|
IPR000467+243-289_245-291_247-286+|IPR040052+1-294+
|
SM00443+243-289+
|
PF01585+247-286+G-patch_domain
|
— |
PTHR13288+1-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
154-248;291-313
|
2.000
|
1-153;249-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
33915.480
|
9.126
|
3.500
|
26.518
|
6.390
|
49.840
|
50.160
|
14.058
|
12.460
|
50.799
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
saddlebrown
|
738.288
|
1076.314
|
891.552
|
842.692
|
819.151
|
648.036
|
894.875
|
537.607
|
553.894
|
673.256
|
622.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.502
|
-0.490
|
— | — |
-0.324
|
0.477
|
-0.375
|
0.878
|
— | — | — | — | — |
No JSON data available for plots.