Hg_chrom3_TN10mRNA_5331
Organism: Heterodera glycines Gene Locus: chr3:5776031-5778056 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 1.179 | 0.666 | 0.583 | 1.737 | 0.867 | 0.436 | 1.127 | 1.628 | 1.256 | 1.11 | 1.491 | 2.973 | 0.867 | 0.862 | 1.167 | 0.369 | 0.64 | 0.867 | 0.829 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_5331
|
10-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
mitochondria
|
KPRK
|
42-65
|
0.968
|
— | — | — |
0.661
|
0.396
|
2.000
|
— |
0.168
|
0.117
|
0.012
|
0.082
|
0.879
|
0.205
|
0.548
|
0.016
|
0.322
|
0.005
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007595
|
1.000
|
1.000
|
Hsc_gene_1200.t1
|
Hsc_gene_1200.t1
|
— | — |
CAD2178384.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006487|GO:0008250|GO:0016020
|
GO:0008150_0.958|GO:0009987_0.923|GO:0005575_0.656|GO:0110165_0.656|GO:0016020_0.636|GO:0005886_0.600|GO:0071944_0.600|GO:0043226_0.560|GO:0005622_0.559|GO:0043229_0.545|GO:0043227_0.524|GO:0008152_0.519|GO:0009058_0.518|GO:0044238_0.516|GO:0043231_0.513|GO:0044237_0.510|GO:0005737_0.509|GO:0043170_0.507|GO:0044249_0.506|GO:0019538_0.502
|
IPR008814+25-300_25-301+
|
— |
PF05817+25-300+Oligosaccharyltransferase_subunit_Ribophorin_II
|
— |
PTHR12640+25-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
41567.780
|
5.501
|
-5.000
|
27.887
|
16.901
|
46.761
|
53.239
|
13.803
|
14.085
|
38.592
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgreen
|
312.855
|
108.789
|
104.905
|
67.188
|
24.990
|
20.571
|
7.708
|
41.556
|
1317.414
|
239.789
|
701.628
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.280
|
-0.832
|
-0.536
|
-1.453
|
— |
-1.408
|
0.911
|
-2.291
|
— |
-4.168
|
— | — | — |