Hg_chrom3_TN10mRNA_5332
Organism: Heterodera glycines Gene Locus: chr3:5778105-5780662 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.964 | 0.402 | 0.762 | 0.645 | 0.85 | 1.217 | 0.552 | 1.964 | 1.456 | 0.419 | 1.462 | 1.995 | 1.009 | 0.282 | 0.947 | 0.906 | 1.465 | 1.7 | 0.731 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5057
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_5332
|
3-Not_Clustered
|
0.830
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.085
|
0.087
|
0.033
|
0.163
|
0.379
|
0.782
|
0.591
|
0.043
|
0.237
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007596
|
1.000
|
1.000
|
Hsc_gene_1199.t1
|
Hsc_gene_1199.t1
|
— |
Q10000.3 Transmembrane protein 144 homolog [Caenorhabditis elegans]
|
NP_498062.2 Transmembrane protein 144 homolog [Caenorhabditis elegans];Q10000.3 Transmembrane protein 144 homolog [Caenorhabditis elegans];CCD65875.1 Transmembrane protein 144 homolog [Caenorhabditis elegans]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015144|GO:0016020|GO:0034219
|
— |
IPR010651+3-358+|IPR012435+5-358+
|
— |
PF07857+5-358+Transmembrane_family,_TMEM144_of_transporters
|
— |
PTHR16119+3-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
38959.720
|
4.831
|
-5.000
|
11.326
|
12.983
|
30.939
|
69.061
|
5.249
|
6.077
|
53.591
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
506.071
|
329.418
|
843.852
|
290.096
|
194.892
|
515.480
|
500.182
|
1259.297
|
297.044
|
516.322
|
422.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.128
|
-0.320
|
-1.431
|
-0.605
|
1.417
|
— |
1.181
|
-1.189
|
— | — | — | — | — |
No JSON data available for plots.