Hg_chrom3_TN10mRNA_5336
Organism: Heterodera glycines Gene Locus: chr3:5787833-5788650 Feature type: polypeptideProtein Sequence
Length: 145
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.561 | 0.962 | 1.129 | 0.238 | 1.609 | 1.415 | 0.411 | 0.69 | 1.839 | 1.212 | 1.045 | 2.434 | 2.299 | 0.531 | 0.985 | 0.788 | 1.018 | 0.731 | 1.061 | 0.609 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom3_TN10mRNA_5336
|
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-22
|
0.703
|
0.925
|
0.000
|
0.000
|
0.667
|
0.462
|
0.019
|
0.484
|
0.180
|
0.160
|
0.079
|
0.012
|
0.224
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007599
|
1.000
|
1.000
|
Hsc_gene_1196.t1
|
Hsc_gene_1196.t1
|
— | — |
KAI3416228.1 hypothetical protein GPALN_005772 [Globodera pallida]
|
PCJ64584
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-145
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
17039.560
|
4.710
|
-5.000
|
28.966
|
13.103
|
50.345
|
49.655
|
13.103
|
15.862
|
38.621
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
317.544
|
11.498
|
3.385
|
45.585
|
558.341
|
1562.232
|
48.016
|
125.631
|
74.635
|
450.270
|
289.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.003
|
1.851
|
3.870
|
3.582
|
1.501
|
-5.016
|
-3.756
|
-1.242
|
— | — | — | — | — |