Hg_chrom3_TN10mRNA_5337
Organism: Heterodera glycines Gene Locus: chr3:5789052-5793331 Feature type: polypeptideProtein Sequence
Length: 783
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.158 | 0.79 | 1.321 | 1.064 | 1.048 | 1.095 | 0.894 | 0.596 | 0.759 | 0.697 | 1.277 | 0.639 | 1.474 | 1.72 | 1.022 | 0.879 | 0.716 | 1.277 | 1.39 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5062
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_1195
|
Hg_chrom3_TN10mRNA_5337
|
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRQSGNANPNLGRVVRK,RKACKLVVQIAVEARKAER,KRGQSGEKGGQSGEKAGGNKR
|
— | — | — | — |
1-27
|
0.935
|
1.000
|
0.000
|
0.000
|
0.137
|
0.066
|
0.030
|
0.223
|
0.145
|
0.060
|
0.090
|
0.023
|
0.210
|
0.897
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007600
|
1.000
|
1.000
|
Hsc_gene_1195.t1
|
Hsc_gene_1195.t1
|
— |
Q19673.5 Putative tyrosinase-like protein tyr-3 [Caenorhabditis elegans]
|
KAJ1346272.1 prephenate dehydrogenase (NADP(+)) [Parelaphostrongylus tenuis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.900|GO:0008150_0.747|GO:0005575_0.718|GO:0110165_0.716|GO:0005488_0.625|GO:0016020_0.599|GO:0005622_0.585|GO:0003824_0.578|GO:0043226_0.542|GO:0008152_0.540|GO:0009987_0.520|GO:0043229_0.517|GO:0043227_0.511|GO:0043231_0.505
|
IPR002227+222-413_240-257_269-274_374-385_394-412_395-406+|IPR003582+655-688_655-691+|IPR008922+186-478_189-479+|IPR050316+136-555+
|
— |
PF00264+222-413+Common_central_domain_of_tyrosinase|PF01549+655-688+ShK_domain-like
|
— |
PTHR11474+136-555+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
526-646;783-783
|
2.000
|
1-525;647-782
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
86912.470
|
8.556
|
25.000
|
25.543
|
10.473
|
47.126
|
52.874
|
14.815
|
10.728
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
23032.624
|
5.639
|
24.634
|
36.595
|
56868.086
|
120389.774
|
76348.151
|
5898.067
|
1.028
|
3427.855
|
1959.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.899
|
2.558
|
0.677
|
10.568
|
1.096
|
-0.647
|
-4.479
|
3.845
|
-11.554
|
5.058
|
4.239
|
— | — |