Hg_chrom3_TN10mRNA_5338
Organism: Heterodera glycines Gene Locus: chr3:5795220-5796589 Feature type: polypeptideProtein Sequence
Length: 163
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.141 | 0.856 | 0.335 | 2.539 | 1.022 | 2.045 | 0.876 | 0.613 | 0.409 | 1.326 | 0.465 | 2.887 | 1.193 | 1.534 | 1.377 | 0.613 | 0.302 | 1.208 | 0.944 | 0.18 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5063
|
— | — |
1.556
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_1193;Hsc_gene_1208
|
Hg_chrom3_TN10mRNA_5338
|
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRRR
|
— | — | — | — |
1-25
|
0.999
|
1.000
|
0.000
|
0.000
|
0.245
|
0.251
|
0.018
|
0.143
|
0.224
|
0.025
|
0.049
|
0.009
|
0.093
|
0.760
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001949
|
3.000
|
1.000
|
Hsc_gene_1193.t1
|
Hsc_gene_1193.t1;Hsc_gene_1208.t1
|
— | — |
KAI3415515.1 hypothetical protein GPALN_005121 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
17927.030
|
7.888
|
4.000
|
19.018
|
7.362
|
36.810
|
63.190
|
11.043
|
7.975
|
52.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
788.564
|
5.823
|
8.002
|
2.420
|
2247.489
|
5455.817
|
2.641
|
29.061
|
59.589
|
498.555
|
310.427
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.403
|
-1.617
|
9.819
|
1.296
|
-11.006
|
-7.664
|
-3.317
|
— |
-4.551
|
— | — | — |