SCN Proteipedia

Hg_chrom3_TN10mRNA_5340

Organism: Heterodera glycines Gene Locus: chr3:5805416-5810721 Feature type: polypeptide

Protein Sequence

Length: 616

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.887	0.529	0.885	0.896	1.407	1.207	0.599	0.649	1.335	1.492	0.664	1.814	1.443	0.687	1.292	1.067	1.011	1.058	0.749	0.573	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5065	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKRR	18-38	0.974	2-33	1.000	—	—	0.000	—	—	0.050	0.138	0.064	0.100	0.308	0.461	0.351	0.012	0.683	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007601	1.000	1.000	Hsc_gene_1191.t2	Hsc_gene_1191.t1;Hsc_gene_1191.t2	—	Q9XXD1.3 Probable voltage-gated potassium channel subunit kvs-4 [Caenorhabditis elegans]	KAI1719914.1 ion transport protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005249\|GO:0006811\|GO:0006813\|GO:0008076\|GO:0016020\|GO:0051260\|GO:0055085	GO:0008150_0.920\|GO:0005575_0.844\|GO:0110165_0.837\|GO:0006810_0.827\|GO:0051179_0.827\|GO:0051234_0.827\|GO:0071944_0.804\|GO:0005886_0.796\|GO:0016020_0.796\|GO:0009987_0.774\|GO:0003674_0.749\|GO:0006811_0.711\|GO:0055085_0.698\|GO:0006812_0.665\|GO:0030001_0.656\|GO:0034220_0.655\|GO:0005215_0.623\|GO:0022857_0.623\|GO:0098660_0.617\|GO:0098655_0.610\|GO:0015075_0.601\|GO:0098662_0.590\|GO:0005216_0.588\|GO:0015267_0.588\|GO:0022803_0.588\|GO:0006813_0.574\|GO:0008324_0.572\|GO:0015318_0.551\|GO:0005261_0.536\|GO:0022890_0.533\|GO:0046873_0.533\|GO:0065007_0.519\|GO:0071805_0.511	IPR003131+155-254+\|IPR003968+204-214_446-454_470-484_541-552+\|IPR003971+196-209_220-235_243-255_540-558+\|IPR005821+305-563+\|IPR011333+134-264_153-256+\|IPR027359+279-453+	—	PF00520+305-563+Ion_transport_protein\|PF02214+155-254+BTB/POZ_domain	G3DSA:1.10.287.70:FF:000005+454-564+potassium_voltage-gated_channel_subfamily_G_member_1\|G3DSA:1.20.120.350:FF:000070+277-453+K+_channel_tetramerization_domain_protein	PTHR11537+152-591+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-616	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.630	69312.900	4.989	-12.000	25.325	9.416	45.942	54.058	12.013	13.312	46.591

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	716.330	332.025	795.980	532.672	295.998	288.597	416.930	1414.724	744.407	1046.789	917.197

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.032	0.545	-0.471	-0.879	—	0.543	2.186	-1.617	—	—	—	—	—

No JSON data available for plots.

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