Hg_chrom3_TN10mRNA_5341
Organism: Heterodera glycines Gene Locus: chr3:5812956-5813901 Feature type: polypeptideProtein Sequence
Length: 122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.239 | 0.572 | 0.745 | 0.283 | 0.273 | 0.841 | 0.585 | 2.049 | 0.546 | 2.437 | 0.994 | 0.964 | 2.049 | 0.788 | 0.502 | 0.468 | 0.806 | 1.366 | 1.892 | 1.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5066
|
— | — |
1.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
5.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.322
|
0.288
|
0.140
|
0.095
|
0.919
|
0.377
|
0.559
|
0.090
|
0.117
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000817
|
4.000
|
2.000
|
Hsc_gene_1189.t1;Hsc_gene_1190.t1
|
Hsc_gene_1189.t1;Hsc_gene_1190.t1;Hsc_gene_13201.t1;Hsc_gene_13201.t2
|
— |
Q6CE07.2 Protein YOP1 [Yarrowia lipolytica CLIB122]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.814|GO:0110165_0.809|GO:0008150_0.789|GO:0016020_0.751|GO:0005622_0.704|GO:0005737_0.704|GO:0071944_0.691|GO:0005886_0.684|GO:0043226_0.669|GO:0043229_0.660|GO:0043227_0.658|GO:0043231_0.652|GO:0005773_0.605|GO:0009987_0.598|GO:0012505_0.579|GO:0005783_0.525
|
IPR004345+34-115_36-112+
|
— |
PF03134+36-112+TB2/DP1,_HVA22_family
|
— |
PTHR12300+34-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-122
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
13903.480
|
9.582
|
6.500
|
18.852
|
19.672
|
32.787
|
67.213
|
13.115
|
5.738
|
44.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
935.456
|
11.161
|
18.922
|
89.888
|
189.135
|
4008.041
|
98.551
|
4699.058
|
0.000
|
674.587
|
385.478
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.872
|
2.361
|
1.043
|
4.420
|
-5.337
|
— |
-5.430
|
-10.181
|
7.347
|
— | — | — |
No JSON data available for plots.