Hg_chrom3_TN10mRNA_5342
Organism: Heterodera glycines Gene Locus: chr3:5814822-5816156 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.247 | 0.836 | 0.661 | 0.958 | 0.491 | 0.867 | 1.533 | 1.533 | 1.398 | 0.929 | 1.127 | 1.916 | 1.105 | 1.095 | 0.985 | 0.942 | 0.987 | 0.0 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5067
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
11-32
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.074
|
0.825
|
0.025
|
0.235
|
0.011
|
0.045
|
0.025
|
0.025
|
0.084
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007602
|
1.000
|
1.000
|
Hsc_gene_1188.t1
|
Hsc_gene_1188.t1
|
— | — |
XP_050677534.1 arylalkylamine N-acetyltransferase 1-like [Leptidea sinapis];XP_050677535.1 arylalkylamine N-acetyltransferase 1-like [Leptidea sinapis]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
— |
IPR000182+102-242_165-213+|IPR016181+45-241+
|
— |
PF00583+165-213+Acetyltransferase_(GNAT)_family
|
— |
PTHR20905+44-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-261
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
28829.310
|
8.365
|
7.000
|
24.904
|
11.111
|
44.828
|
55.172
|
14.559
|
10.345
|
50.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
542.957
|
19.870
|
21.184
|
101.983
|
371.229
|
1394.882
|
313.718
|
1330.935
|
0.514
|
1042.376
|
595.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.221
|
2.379
|
1.833
|
1.924
|
-2.143
|
— |
-1.938
|
-10.335
|
7.045
|
— | — | — |
No JSON data available for plots.