Hg_chrom3_TN10mRNA_5347
Organism: Heterodera glycines Gene Locus: chr3:5832908-5834973 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.151 | 1.26 | 0.91 | 1.1 | 1.608 | 0.432 | 1.32 | 1.54 | 1.338 | 1.15 | 1.747 | 1.65 | 0.635 | 1.212 | 1.084 | 0.649 | 0.75 | 0.508 | 0.291 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5072
|
— | — |
1.778
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.528
|
0.231
|
0.026
|
0.365
|
0.305
|
0.124
|
0.155
|
0.180
|
0.099
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000781
|
3.000
|
3.000
|
Hsc_gene_3509.t1;Hsc_gene_8104.t1;Hsc_gene_8104.t2
|
— | — |
O75132.2 Zinc finger BED domain-containing protein 4 [Homo sapiens]
|
KAF7634207.1 BED-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.899|GO:0110165_0.893|GO:0005622_0.873|GO:0003674_0.830|GO:0043226_0.826|GO:0016020_0.819|GO:0043229_0.802|GO:0005488_0.795|GO:0005737_0.790|GO:0043227_0.778|GO:0043231_0.762|GO:0005515_0.756|GO:0005634_0.675|GO:0042802_0.673|GO:0031974_0.596|GO:0043233_0.596|GO:0070013_0.596|GO:0031981_0.587|GO:0005654_0.573
|
IPR012337+88-254+|IPR052035+22-210+
|
— | — | — |
PTHR46481+22-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
34817.970
|
7.364
|
4.000
|
29.703
|
10.231
|
52.475
|
47.525
|
16.172
|
13.531
|
43.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
20.779
|
4.242
|
2.284
|
2.995
|
2.958
|
14.448
|
0.606
|
0.559
|
1.028
|
79.603
|
45.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.300
|
-4.562
|
-4.822
|
— |
-6.040
|
— | — | — | — |
No JSON data available for plots.