Hg_chrom3_TN10mRNA_5348
Organism: Heterodera glycines Gene Locus: chr3:5835931-5837510 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.251 | 0.338 | 1.533 | 0.1 | 1.308 | 0.671 | 0.519 | 0.727 | 0.258 | 1.021 | 1.894 | 0.513 | 0.888 | 2.124 | 0.356 | 0.997 | 1.239 | 1.057 | 0.671 | 0.684 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5073
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
PKKADKKKSEEAPAKEPKKKADKKKKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.137
|
0.082
|
0.284
|
0.649
|
0.465
|
0.530
|
0.038
|
0.182
|
0.182
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000817
|
4.000
|
2.000
|
Hsc_gene_1189.t1;Hsc_gene_1190.t1
|
Hsc_gene_13201.t1;Hsc_gene_13201.t2
|
— |
Q6CE07.2 Protein YOP1 [Yarrowia lipolytica CLIB122]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.839|GO:0005575_0.831|GO:0110165_0.831|GO:0016020_0.802|GO:0005622_0.763|GO:0043226_0.741|GO:0043229_0.736|GO:0071944_0.733|GO:0005886_0.722|GO:0043227_0.707|GO:0009987_0.694|GO:0043231_0.687|GO:0005737_0.641|GO:0005773_0.569|GO:0012505_0.550
|
IPR004345+256-336_258-334+
|
— |
PF03134+258-334+TB2/DP1,_HVA22_family
|
— |
PTHR12300+256-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-195
|
1.000
|
196-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
37348.120
|
5.368
|
-4.500
|
31.977
|
7.849
|
50.581
|
49.419
|
15.698
|
16.279
|
57.849
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
478.240
|
6.095
|
8.333
|
34.197
|
65.948
|
1429.978
|
46.345
|
2240.011
|
0.000
|
655.708
|
374.690
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.348
|
2.142
|
0.919
|
4.450
|
-4.938
|
— |
-5.449
|
-10.143
|
5.953
|
— | — | — |
No JSON data available for plots.