Hg_chrom3_TN10mRNA_5349
Organism: Heterodera glycines Gene Locus: chr3:5838604-5841274 Feature type: polypeptideProtein Sequence
Length: 577
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.967 | 0.819 | 0.478 | 1.849 | 1.244 | 0.99 | 1.127 | 0.847 | 0.843 | 0.788 | 1.121 | 0.77 | 1.266 | 1.733 | 1.213 | 1.136 | 0.551 | 0.533 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5074
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,RRVFCTLSSTRRPRKI,RRRVAVHPPLSISDRIRRT,RREEGERDGGDGMEEEKRR,RRPRKIAPQKGGVGESGEKTRGKEEEKRREE
|
— | — |
25-95
|
0.986
|
— | — |
0.000
|
— | — |
0.854
|
0.077
|
0.018
|
0.450
|
0.018
|
0.021
|
0.029
|
0.021
|
0.130
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001950
|
1.000
|
3.000
|
Hsc_gene_1187.t1;Hsc_gene_1187.t2;Hsc_gene_1187.t3
|
Hsc_gene_1187.t1
|
— | — |
KAI3415525.1 hypothetical protein GPALN_005131 [Globodera pallida]
|
KAK1977244
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
73-577
|
1.000
|
1-72
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
63924.720
|
5.978
|
-4.500
|
31.542
|
7.106
|
55.979
|
44.021
|
15.945
|
15.598
|
51.300
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
624.963
|
645.490
|
1089.751
|
735.737
|
654.132
|
564.506
|
940.108
|
625.100
|
698.545
|
239.744
|
436.373
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
— |
-0.458
|
-0.201
|
-0.198
|
0.747
|
— |
0.734
|
— | — | — | — | — |
No JSON data available for plots.