Hg_chrom3_TN10mRNA_5351
Organism: Heterodera glycines Gene Locus: chr3:5843036-5847271 Feature type: polypeptideProtein Sequence
Length: 713
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.995 | 1.044 | 1.046 | 0.919 | 0.912 | 1.187 | 0.751 | 1.753 | 1.122 | 1.27 | 0.638 | 1.898 | 1.052 | 0.701 | 1.259 | 1.022 | 0.805 | 0.999 | 0.863 | 0.99 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5076
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.359
|
0.454
|
0.017
|
0.519
|
0.134
|
0.170
|
0.089
|
0.182
|
0.118
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007604
|
1.000
|
1.000
|
Hsc_gene_1185.t1
|
Hsc_gene_1185.t1;Hsc_gene_1185.t2
|
— |
Q5ZMA6.1 Glutamine-dependent NAD(+) synthetase [Gallus gallus]
|
KAI6230974.1 Glutamine-dependent NAD(+) synthetase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003952|GO:0004359|GO:0005524|GO:0005737|GO:0009435
|
GO:0005575_0.870|GO:0110165_0.870|GO:0008150_0.799|GO:0009987_0.741|GO:0005622_0.639|GO:0003674_0.585|GO:0005737_0.567
|
IPR003010+11-282_12-282+|IPR003694+9-697_337-649_419-651+|IPR014445+8-683_11-681+|IPR014729+337-695+|IPR022310+346-600+|IPR036526+3-311_9-295+
|
— |
PF00795+12-282+Carbon-nitrogen_hydrolase|PF02540+346-600+NAD_synthase
|
G3DSA:3.40.50.620:FF:000036+337-695+Glutamine-dependent_NAD(+)_synthetase
|
PTHR23090+9-697+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
690-713
|
1.000
|
1-689
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
79877.050
|
6.941
|
6.500
|
25.105
|
11.781
|
46.283
|
53.717
|
13.885
|
11.220
|
50.070
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
1430.195
|
2090.410
|
2230.852
|
1736.386
|
1600.696
|
1424.544
|
2407.042
|
1592.126
|
954.565
|
635.407
|
772.189
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.135
|
-0.405
|
-0.253
|
-0.149
|
-0.154
|
0.767
|
— |
0.739
|
— | — | — | — | — |
No JSON data available for plots.