Hg_chrom3_TN10mRNA_5352
Organism: Heterodera glycines Gene Locus: chr3:5850473-5854048 Feature type: polypeptideProtein Sequence
Length: 475
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.346 | 0.979 | 1.072 | 0.871 | 1.333 | 0.972 | 0.727 | 2.0 | 0.702 | 1.622 | 0.702 | 1.362 | 1.228 | 0.283 | 1.246 | 0.902 | 0.656 | 0.766 | 1.457 | 0.743 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5077
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.883
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRSKATVLIEERNKMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.611
|
0.254
|
0.003
|
0.669
|
0.132
|
0.428
|
0.091
|
0.048
|
0.220
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007605
|
1.000
|
1.000
|
Hsc_gene_1183.t1
|
Hsc_gene_1183.t1
|
— |
A3KPN8.1 Tetratricopeptide repeat protein 38 [Danio rerio]
|
KAI1720119.1 tetratricopeptide repeat protein 38 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.853|GO:0110165_0.853|GO:0016020_0.745|GO:0043226_0.696|GO:0043227_0.666|GO:0005576_0.598|GO:0005615_0.577|GO:0031982_0.575|GO:0043230_0.566|GO:0065010_0.565|GO:1903561_0.565|GO:0070062_0.564
|
IPR011990+25-306_112-277+|IPR033891+7-471_62-428+
|
— | — | — |
PTHR16263+7-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-475
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
53399.440
|
6.006
|
-5.500
|
28.632
|
12.842
|
46.947
|
53.053
|
14.737
|
13.895
|
47.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
449.557
|
382.695
|
586.525
|
406.476
|
272.497
|
394.562
|
802.438
|
491.415
|
641.935
|
234.130
|
408.904
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.388
|
— |
-0.421
|
-0.609
|
0.547
|
1.036
|
— |
0.850
|
— | — | — | — | — |
No JSON data available for plots.