SCN Proteipedia

Hg_chrom3_TN10mRNA_5355

Organism: Heterodera glycines Gene Locus: chr3:5860324-5876205 Feature type: polypeptide

Protein Sequence

Length: 2,161

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.882	0.839	0.707	0.574	0.802	1.317	0.667	1.18	1.059	1.413	0.701	1.851	1.748	0.748	1.435	1.124	0.971	1.066	1.566	0.667	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5080	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRRR,RKRR,RRKR	108-128	0.996	—	—	—	—	0.000	—	—	0.078	0.115	0.056	0.179	0.304	0.390	0.139	0.003	0.809	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003566	1.000	2.000	Hsc_gene_1180.t1;Hsc_gene_1180.t2	Hsc_gene_1180.t1;Hsc_gene_1180.t2	—	Q8IZF0.1 Sodium leak channel NALCN [Homo sapiens]	KAI1705689.1 ion transport protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005261\|GO:0006811\|GO:0016020\|GO:0055085	GO:0008150_0.978\|GO:0009987_0.941\|GO:0006810_0.928\|GO:0051179_0.928\|GO:0051234_0.928\|GO:0003674_0.861\|GO:0055085_0.859\|GO:0006811_0.843\|GO:0034220_0.824\|GO:0005215_0.819\|GO:0005216_0.819\|GO:0015075_0.819\|GO:0015267_0.819\|GO:0022803_0.819\|GO:0022857_0.819\|GO:0006812_0.804\|GO:0030001_0.804\|GO:0098660_0.795\|GO:0005575_0.793\|GO:0110165_0.791\|GO:0005886_0.788\|GO:0016020_0.788\|GO:0071944_0.788\|GO:0098655_0.785\|GO:0005261_0.780\|GO:0008324_0.780\|GO:0098662_0.760\|GO:0015318_0.611\|GO:0065007_0.598\|GO:0022890_0.583\|GO:0046873_0.583\|GO:0006816_0.551\|GO:0070588_0.537	IPR005821+241-529_590-814_1145-1424_1474-1741+\|IPR027359+235-366_583-703_1143-1271_1468-1597+\|IPR028823+242-1963+	—	PF00520+241-529_590-814_1145-1424_1474-1741+Ion_transport_protein	G3DSA:1.10.287.70:FF:000061+1604-1734+Sodium_leak_channel_non-selective_protein\|G3DSA:1.10.287.70:FF:000066+707-843+Sodium_leak_channel_non-selective_protein\|G3DSA:1.20.120.350:FF:000030+582-701+sodium_leak_channel_non-selective_protein	PTHR46141+242-1963+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-214;886-1061;1902-2161	2.000	215-885;1062-1901	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.821	245387.650	9.860	89.500	22.721	12.957	45.257	54.743	14.021	8.700	47.062

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	593.885	749.744	2282.201	703.193	248.424	268.314	419.936	830.162	221.472	368.904	305.719

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.376	-0.230	-1.590	-1.533	—	0.656	1.529	-0.843	—	—	—	—	—

No JSON data available for plots.

Back to Browser