Hg_chrom3_TN10mRNA_5356
Organism: Heterodera glycines Gene Locus: chr3:5877490-5878255 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.465 | 0.97 | 0.92 | 0.889 | 0.513 | 1.032 | 1.0 | 1.63 | 0.45 | 0.909 | 2.353 | 1.296 | 1.282 | 1.633 | 0.857 | 0.656 | 1.515 | 1.026 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5081
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.554
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — |
30-50
|
0.984
|
— | — | — | — |
0.000
|
— | — |
0.443
|
0.457
|
0.190
|
0.615
|
0.189
|
0.128
|
0.150
|
0.395
|
0.148
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007608
|
1.000
|
1.000
|
Hsc_gene_1179.t1
|
Hsc_gene_1179.t1;Hsc_gene_16047.t1
|
— |
B8HUM7.1 Nucleoside diphosphate kinase [Cyanothece sp. PCC 7425]
|
KAI3415530.1 Nucleoside diphosphate kinase, mitochondrial [Globodera pallida]
|
WP_035155791
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004550|GO:0006183|GO:0006228|GO:0006241
|
GO:0005575_0.815|GO:0110165_0.815|GO:0008150_0.714|GO:0003674_0.688|GO:0005622_0.667|GO:0016020_0.631|GO:0005737_0.595|GO:0043226_0.587|GO:0043229_0.576|GO:0043227_0.558|GO:0043231_0.552|GO:0009987_0.533|GO:0003824_0.505
|
IPR001564+4-26_48-67_68-85_117-136+|IPR034907+1-143_2-140+|IPR036850+1-141_1-144+
|
SM00562+1-143+
|
PF00334+2-140+Nucleoside_diphosphate_kinase
|
G3DSA:3.30.70.141:FF:000003+1-144+Nucleoside_diphosphate_kinase
|
PTHR11349+1-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-150
|
7mk0_X
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
16646.330
|
9.206
|
6.500
|
26.667
|
10.667
|
40.667
|
59.333
|
16.000
|
10.667
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightyellow
|
1919.196
|
19.566
|
324.015
|
1336.326
|
2312.672
|
174.045
|
344.498
|
7490.190
|
6.911
|
3890.807
|
2226.280
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.822
|
5.956
|
2.151
|
0.760
|
-3.718
|
1.000
|
5.328
|
-4.298
|
-9.329
|
7.793
|
— | — | — |
No JSON data available for plots.