Hg_chrom3_TN10mRNA_5361
Organism: Heterodera glycines Gene Locus: chr3:5889535-5891542 Feature type: polypeptideProtein Sequence
Length: 405
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 0.689 | 1.347 | 0.511 | 0.782 | 0.506 | 0.588 | 1.481 | 1.097 | 1.301 | 0.935 | 2.033 | 2.058 | 0.997 | 1.411 | 0.705 | 1.012 | 0.748 | 1.519 | 2.033 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5086
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KKNGTVAVELAKKVRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.118
|
0.055
|
0.009
|
0.115
|
0.500
|
0.330
|
0.851
|
0.003
|
0.122
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007613
|
1.000
|
1.000
|
Hsc_gene_1174.t1
|
Hsc_gene_1174.t1
|
— |
Q18515.2 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Caenorhabditis elegans]
|
KAI1729915.1 fringe-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.907|GO:0009987_0.821|GO:0008152_0.758|GO:0044238_0.732|GO:0003674_0.719|GO:0044237_0.715|GO:0009058_0.708|GO:0044249_0.682|GO:0043170_0.681|GO:0019538_0.665|GO:0009059_0.658|GO:1901135_0.646|GO:1901137_0.623|GO:0009100_0.615|GO:0009101_0.612|GO:0003824_0.608|GO:0043412_0.524|GO:0036211_0.519|GO:0016740_0.516|GO:0032501_0.516|GO:0070085_0.505|GO:0006486_0.502|GO:0043413_0.502
|
IPR003378+114-285+|IPR026050+97-373+
|
— |
PF02434+114-285+Fringe-like
|
— |
PTHR23033+97-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-405
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
48001.230
|
8.392
|
10.000
|
28.148
|
19.259
|
44.198
|
55.802
|
16.049
|
12.099
|
42.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
brown
|
25.833
|
21.871
|
25.317
|
17.242
|
52.627
|
98.496
|
36.067
|
20.899
|
8.098
|
4.750
|
6.185
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.574
|
0.922
|
-1.441
|
-2.343
|
0.927
|
— | — | — | — | — |
No JSON data available for plots.