Hg_chrom3_TN10mRNA_5364
Organism: Heterodera glycines Gene Locus: chr3:5893620-5894033 Feature type: polypeptideProtein Sequence
Length: 123
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 2.08 | 0.148 | 0.0 | 1.084 | 0.625 | 0.774 | 0.0 | 0.723 | 0.439 | 0.37 | 1.913 | 4.065 | 3.44 | 0.83 | 2.091 | 0.133 | 0.246 | 0.625 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5088
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1192;Hsc_gene_1209;Hsc_gene_1194;Hsc_gene_1207;Hsc_gene_1172
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.963
|
1.000
|
0.000
|
0.000
|
0.311
|
0.209
|
0.060
|
0.291
|
0.104
|
0.027
|
0.045
|
0.020
|
0.038
|
0.957
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000816
|
3.000
|
3.000
|
Hsc_gene_1194.t1;Hsc_gene_1207.t1;Hsc_gene_1209.t1
|
Hsc_gene_1172.t1;Hsc_gene_1192.t1;Hsc_gene_1194.t1;Hsc_gene_1207.t1;Hsc_gene_1209.t1
|
— | — |
AJR19777.1 esophageal gland-localized secretory protein 9 [Heterodera glycines]
|
RAP26485
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
115-123
|
1.000
|
1-114
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
13407.010
|
5.002
|
-1.000
|
13.821
|
15.447
|
40.650
|
59.350
|
6.504
|
7.317
|
59.350
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
5544.451
|
2.522
|
2048.516
|
1729.765
|
162.774
|
52.349
|
8.208
|
2679.655
|
28959.836
|
30.675
|
12428.887
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9.439
|
9.282
|
— |
-3.443
|
-1.622
|
-2.663
|
5.580
|
-8.211
|
10.147
|
-3.918
|
— | — | — |