Hg_chrom3_TN10mRNA_5366
Organism: Heterodera glycines Gene Locus: chr3:5896712-5898058 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 0.308 | 0.482 | 1.256 | 0.828 | 1.358 | 2.01 | 0.828 | 0.883 | 0.895 | 0.401 | 1.363 | 0.644 | 3.248 | 0.878 | 0.851 | 0.706 | 0.602 | 0.509 | 0.779 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
58-86
|
0.999
|
— | — |
0.002
|
— | — |
0.039
|
0.096
|
0.004
|
0.113
|
0.468
|
0.156
|
0.361
|
0.005
|
0.500
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007615
|
1.000
|
1.000
|
Hsc_gene_1170.t1
|
Hsc_gene_1170.t1
|
— |
Q17459.2 Putative cuticle collagen 145 [Caenorhabditis elegans]
|
PIO73243.1 nematode cuticle collagen domain protein, partial [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+6-58_10-56+|IPR008160+158-216_226-284+|IPR050632+14-295+
|
SM01088+6-58+
|
PF01391+158-216_226-284+Collagen_triple_helix_repeat_(20_copies)|PF01484+10-56+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+14-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-302
|
1.000
|
1-149
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
30932.160
|
6.607
|
0.500
|
16.225
|
7.285
|
33.113
|
66.887
|
8.609
|
7.616
|
62.583
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
228.567
|
49.515
|
19.029
|
28.275
|
19.718
|
88.590
|
67.403
|
56.505
|
2.056
|
875.051
|
500.910
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.608
|
-0.945
|
0.680
|
-0.552
|
2.182
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.