Hg_chrom3_TN10mRNA_5376
Organism: Heterodera glycines Gene Locus: chr3:5944109-5946211 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.084 | 0.923 | 0.361 | 0.479 | 0.827 | 0.865 | 0.992 | 0.496 | 1.984 | 1.931 | 0.511 | 1.984 | 1.378 | 0.649 | 1.093 | 0.964 | 0.813 | 1.082 | 1.526 | 0.35 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5100
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
6-31
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.089
|
0.320
|
0.021
|
0.145
|
0.288
|
0.390
|
0.290
|
0.016
|
0.444
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007619
|
1.000
|
1.000
|
Hsc_gene_1162.t1
|
Hsc_gene_1162.t1
|
— |
O34718.1 Major myo-inositol transporter IolT [Bacillus subtilis subsp. subtilis str. 168]
|
KAF7637130.1 MFS domain-containing protein [Meloidogyne graminicola]
|
WP_227007640
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.880|GO:0110165_0.880|GO:0008150_0.876|GO:0016020_0.846|GO:0009987_0.701|GO:0005886_0.695|GO:0071944_0.695|GO:0006810_0.682|GO:0051179_0.682|GO:0051234_0.682|GO:0003674_0.658|GO:0055085_0.627|GO:0005215_0.557|GO:0022857_0.557|GO:0005622_0.536|GO:0005737_0.535|GO:0043226_0.524
|
IPR003663+28-38_111-130_396-408+|IPR005828+24-472+|IPR005829+74-90_116-141+|IPR020846+20-461+|IPR036259+8-475_9-469+|IPR050814+11-485+
|
— |
PF00083+24-472+Sugar_(and_other)_transporter
|
— |
PTHR48020+11-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;493-504
|
1.000
|
2-492
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
55096.240
|
9.426
|
11.500
|
16.667
|
9.127
|
35.714
|
64.286
|
9.722
|
6.944
|
47.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
163.974
|
16.663
|
106.892
|
187.994
|
110.809
|
315.314
|
313.624
|
327.794
|
5.334
|
196.225
|
114.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.450
|
3.358
|
0.923
|
-0.794
|
1.524
|
— | — | — |
-5.333
|
5.353
|
— | — | — |
No JSON data available for plots.