Hg_chrom3_TN10mRNA_5377
Organism: Heterodera glycines Gene Locus: chr3:5948613-5950728 Feature type: polypeptideProtein Sequence
Length: 374
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 1.43 | 1.264 | 0.645 | 1.114 | 1.097 | 1.114 | 1.07 | 0.951 | 1.012 | 0.972 | 1.887 | 1.04 | 0.463 | 1.255 | 0.84 | 0.745 | 0.77 | 1.645 | 1.18 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5101
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-16
|
0.981
|
0.898
|
0.000
|
0.000
|
0.355
|
0.349
|
0.173
|
0.366
|
0.240
|
0.399
|
0.198
|
0.031
|
0.225
|
0.660
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007620
|
1.000
|
1.000
|
Hsc_gene_1160.t1
|
Hsc_gene_1160.t1;Hsc_gene_1167.t1;Hsc_gene_1167.t2
|
— |
O45734.1 Cathepsin L-like [Caenorhabditis elegans]
|
CAA70693.1 cathepsin L-like cysteine proteinase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0008150_0.820|GO:0005575_0.816|GO:0110165_0.808|GO:0003674_0.615|GO:0005622_0.585|GO:0009987_0.570|GO:0005737_0.562|GO:0016020_0.560|GO:0008152_0.551|GO:0043226_0.522|GO:0003824_0.521|GO:0043229_0.507
|
IPR000169+174-185+|IPR000668+156-372_156-373_174-189_320-330_336-342+|IPR013128+58-366+|IPR013201+66-126+|IPR025660+318-328+|IPR025661+336-355+|IPR038765+64-373+|IPR039417+157-372+
|
SM00645+156-373+|SM00848+66-126+
|
PF00112+156-372+Papain_family_cysteine_protease|PF08246+66-126+Cathepsin_propeptide_inhibitor_domain_(I29)
|
G3DSA:3.90.70.10:FF:000006+57-374+Cathepsin_S
|
PTHR12411+58-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-374
|
8iui_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
42259.440
|
6.500
|
0.000
|
28.342
|
12.032
|
49.198
|
50.802
|
14.706
|
13.636
|
49.465
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
white
|
9610.152
|
7715.746
|
9701.499
|
6920.394
|
6776.021
|
18107.753
|
24317.832
|
18669.585
|
3711.018
|
4682.841
|
4266.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.294
|
-0.380
|
— |
1.434
|
0.436
|
— |
0.523
|
— | — | — | — | — |