Hg_chrom3_TN10mRNA_5383
Organism: Heterodera glycines Gene Locus: chr3:5963942-5965189 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.008 | 1.182 | 0.747 | 0.671 | 1.27 | 0.885 | 1.238 | 1.376 | 1.255 | 0.188 | 1.457 | 1.462 | 1.25 | 1.769 | 0.487 | 1.066 | 1.126 | 0.714 | 1.093 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5106
|
— | — |
2.444
|
5.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
5.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.654
|
0.205
|
0.155
|
0.737
|
0.136
|
0.282
|
0.106
|
0.020
|
0.119
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000551
|
6.000
|
1.000
|
Hsc_gene_15815.t1
|
Hsc_gene_15815.t1
|
— |
P91420.1 Serine/threonine-protein phosphatase PP1-delta [Caenorhabditis elegans]
|
KAF7638997.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.828|GO:0003674_0.792|GO:0009987_0.754|GO:0005575_0.747|GO:0110165_0.738|GO:0003824_0.688|GO:0005622_0.628|GO:0016787_0.586|GO:0140096_0.573|GO:0005737_0.567|GO:0016020_0.562|GO:0016788_0.559|GO:0065007_0.559|GO:0016791_0.545|GO:0042578_0.545|GO:0050789_0.543|GO:0004721_0.540|GO:0050794_0.532
|
IPR004843+78-276+|IPR006186+50-323_78-105_107-134_140-164_141-146_178-204_208-235_265-285_287-303+|IPR029052+29-322_51-322+|IPR050341+45-315+
|
SM00156+50-323+
|
PF00149+78-276+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+45-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
36553.830
|
6.887
|
2.000
|
22.910
|
12.384
|
42.105
|
57.895
|
12.384
|
10.526
|
50.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
343.120
|
107.826
|
308.117
|
319.132
|
302.385
|
480.528
|
145.581
|
1875.672
|
18.537
|
160.031
|
99.391
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.286
|
1.429
|
— | — |
0.682
|
-1.712
|
1.853
|
-3.541
|
— | — | — | — | — |
No JSON data available for plots.