Hg_chrom3_TN10mRNA_5384
Organism: Heterodera glycines Gene Locus: chr3:5966746-5968272 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.099 | 0.916 | 0.143 | 0.272 | 0.131 | 1.211 | 0.469 | 0.394 | 0.875 | 1.383 | 1.432 | 3.242 | 2.843 | 1.06 | 0.964 | 0.9 | 1.033 | 0.954 | 0.606 | 1.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5107
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RKEKKRKAGQKKV
|
41-65
|
0.890
|
— | — | — | — |
0.000
|
— | — |
0.143
|
0.267
|
0.189
|
0.188
|
0.798
|
0.124
|
0.248
|
0.031
|
0.145
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003570
|
2.000
|
1.000
|
Hsc_gene_1066.t1
|
Hsc_gene_1066.t1
|
— |
Q03574.1 Putative fatty acid elongase 4 [Caenorhabditis elegans]
|
KAH7731405.1 CBN-ELO-4 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009922|GO:0016020
|
GO:0008150_0.910|GO:0009987_0.885|GO:0008152_0.736|GO:0009058_0.736|GO:0044237_0.735|GO:0044238_0.727|GO:0044249_0.718|GO:0005575_0.683|GO:0006629_0.683|GO:0110165_0.675|GO:0016020_0.646|GO:0044281_0.644|GO:0008610_0.636|GO:0044255_0.634|GO:0006082_0.633|GO:0006631_0.633|GO:0006633_0.633|GO:0016053_0.633|GO:0019752_0.633|GO:0032787_0.633|GO:0043436_0.633|GO:0044283_0.633|GO:0046394_0.633|GO:0072330_0.633|GO:0043226_0.595|GO:0005622_0.593|GO:0043229_0.582|GO:0005737_0.564|GO:0003674_0.554|GO:0043227_0.545|GO:0043231_0.543|GO:0030497_0.525
|
IPR002076+15-121_22-119+
|
— |
PF01151+22-119+GNS1/SUR4_family
|
— |
PTHR11157+15-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
14630.520
|
11.029
|
16.500
|
16.535
|
17.323
|
37.795
|
62.205
|
14.961
|
1.575
|
43.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
29.693
|
5.807
|
2.411
|
11.775
|
75.624
|
92.612
|
86.785
|
27.062
|
0.000
|
16.628
|
9.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.501
|
0.882
|
2.400
|
2.649
|
— | — |
-1.887
|
1.827
|
— |
4.415
|
— | — | — |
No JSON data available for plots.