Hg_chrom3_TN10mRNA_5387
Organism: Heterodera glycines Gene Locus: chr3:5971331-5972749 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 0.943 | 0.901 | 0.777 | 0.751 | 1.617 | 0.59 | 2.027 | 2.002 | 1.278 | 0.887 | 0.795 | 1.001 | 0.693 | 1.287 | 0.579 | 1.255 | 1.229 | 1.04 | 0.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5110
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — |
57-77
|
0.949
|
— | — | — | — |
0.000
|
— | — |
0.085
|
0.205
|
0.011
|
0.237
|
0.336
|
0.457
|
0.522
|
0.051
|
0.469
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003571
|
2.000
|
1.000
|
Hsc_gene_1072.t1
|
Hsc_gene_1072.t1
|
— |
Q2HJ10.1 Proton-coupled zinc antiporter SLC30A2 [Mus musculus]
|
KHN70945.1 Zinc transporter 2 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006812|GO:0008324|GO:0016020|GO:0055085
|
GO:0008150_0.908|GO:0005575_0.711|GO:0110165_0.711|GO:0009987_0.692|GO:0051179_0.642|GO:0006810_0.641|GO:0016020_0.641|GO:0051234_0.641|GO:0003674_0.624|GO:0005622_0.583|GO:0005737_0.576|GO:0006811_0.575|GO:0006812_0.568|GO:0030001_0.563|GO:0000041_0.553|GO:0006829_0.549|GO:0043226_0.549|GO:0055085_0.526|GO:0043229_0.522|GO:0043227_0.515|GO:0034220_0.510|GO:0098660_0.507|GO:0071944_0.504|GO:0098655_0.502|GO:0098662_0.502
|
IPR002524+57-128_57-207+|IPR027469+28-127_57-129+|IPR036837+132-206+|IPR050681+49-221+
|
— |
PF01545+57-128+Cation_efflux_family
|
— |
PTHR11562+49-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-222
|
7y5h_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
25270.290
|
9.196
|
10.500
|
25.676
|
11.261
|
47.748
|
52.252
|
16.216
|
9.459
|
45.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
300.209
|
726.130
|
190.073
|
111.841
|
85.139
|
117.096
|
232.116
|
392.312
|
72.656
|
563.407
|
353.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.163
|
-2.836
|
-0.657
|
-0.426
|
0.474
|
0.998
|
1.643
|
-0.616
|
-3.089
|
— | — | — | — |
No JSON data available for plots.