Hg_chrom3_TN10mRNA_5389
Organism: Heterodera glycines Gene Locus: chr3:6001475-6002665 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 0.735 | 0.862 | 0.681 | 0.791 | 1.216 | 0.471 | 1.383 | 1.142 | 1.389 | 0.599 | 1.395 | 0.769 | 1.52 | 1.452 | 1.186 | 0.583 | 1.497 | 0.608 | 0.93 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5112
|
— | — |
2.000
|
2.000
|
2.000
|
3.000
|
2.000
|
1.000
|
4.000
|
2.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.446
|
0.220
|
0.014
|
0.803
|
0.118
|
0.239
|
0.248
|
0.047
|
0.235
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001207
|
3.000
|
2.000
|
Hsc_gene_1150.t1;Hsc_gene_1152.t1
|
Hsc_gene_1150.t1;Hsc_gene_1152.t1
|
— |
Q9JLY7.2 Dual specificity protein phosphatase 14 [Mus musculus]
|
KAI1731137.1 dual specificity phosphatase, catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006470|GO:0016311
|
GO:0008150_0.857|GO:0005575_0.817|GO:0003674_0.812|GO:0110165_0.806|GO:0009987_0.802|GO:0005622_0.742|GO:0003824_0.631|GO:0016020_0.605|GO:0008152_0.593|GO:0016787_0.593|GO:0065007_0.590|GO:0044237_0.583|GO:0016788_0.581|GO:0050789_0.580|GO:0016791_0.571|GO:0042578_0.571|GO:0140096_0.551|GO:0050794_0.545|GO:0043226_0.523|GO:0004721_0.522|GO:0043229_0.508
|
IPR000340+22-152+|IPR000387+72-134+|IPR016130+97-107+|IPR020422+14-152_14-155+|IPR029021+11-154_12-182+|IPR052103+6-230+
|
SM00195+14-152+
|
PF00782+22-152+Dual_specificity_phosphatase,_catalytic_domain
|
— |
PTHR45961+6-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-253
|
2wgp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
28169.590
|
8.608
|
7.500
|
23.320
|
9.486
|
43.083
|
56.917
|
13.834
|
9.486
|
52.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
304.492
|
249.409
|
315.661
|
249.405
|
127.344
|
305.041
|
148.485
|
575.708
|
99.534
|
518.355
|
338.861
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.232
|
-1.002
|
1.275
|
-1.033
|
0.817
|
-1.820
|
— | — | — | — | — |
No JSON data available for plots.