Hg_chrom3_TN10mRNA_5392
Organism: Heterodera glycines Gene Locus: chr3:6016177-6018863 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.467 | 1.31 | 0.932 | 0.851 | 1.155 | 0.25 | 1.351 | 1.068 | 1.461 | 0.683 | 1.06 | 2.002 | 1.04 | 1.042 | 0.729 | 0.689 | 1.092 | 1.386 | 0.972 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5115
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.461
|
0.239
|
0.013
|
0.695
|
0.298
|
0.138
|
0.179
|
0.002
|
0.075
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003572
|
2.000
|
1.000
|
Hsc_gene_1148.t1
|
— | — |
Q09512.1 Tubulin--tyrosine ligase-like protein 12 [Caenorhabditis elegans]
|
KAI3415547.1 Tubulin--tyrosine ligase-like protein 12 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036211
|
GO:0008150_0.937|GO:0005575_0.881|GO:0110165_0.874|GO:0005622_0.789|GO:0016020_0.781|GO:0005737_0.773|GO:0071944_0.730|GO:0005886_0.712|GO:0003674_0.536|GO:0009987_0.531
|
IPR004344+1-333_24-329+|IPR027749+2-329+
|
— |
PF03133+24-329+Tubulin-tyrosine_ligase_family
|
— |
PTHR46088+2-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
38491.040
|
5.593
|
-4.500
|
24.625
|
15.015
|
44.745
|
55.255
|
12.312
|
12.312
|
48.348
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
406.100
|
658.202
|
461.722
|
310.501
|
301.391
|
276.546
|
571.647
|
418.056
|
333.131
|
402.565
|
372.808
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.742
|
-1.221
|
-0.464
|
— | — |
1.058
|
0.492
|
0.594
|
— | — | — | — | — |
No JSON data available for plots.