Hg_chrom3_TN10mRNA_5393
Organism: Heterodera glycines Gene Locus: chr3:6020085-6021906 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.001 | 0.783 | 0.873 | 1.308 | 2.012 | 0.512 | 1.772 | 0.9 | 0.924 | 1.189 | 0.745 | 1.055 | 0.779 | 1.757 | 1.049 | 1.245 | 0.652 | 1.558 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5116
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,RRKR,KRKTKRTQKRKERTKKN,KRKERTKKNNSSDTTRRTR,RKERTKKNNSSDTTRRTRW,KRTEEKKKTKKRHNQWEKRKTKRTQKRKERTKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.783
|
0.039
|
0.009
|
0.339
|
0.054
|
0.021
|
0.034
|
0.002
|
0.028
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001951
|
3.000
|
1.000
|
Hsc_gene_1147.t1
|
— | — |
Q9BWU0.2 Kanadaptin [Homo sapiens]
|
KAF7638320.1 FHA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.914|GO:0110165_0.910|GO:0005622_0.880|GO:0043226_0.847|GO:0043229_0.842|GO:0016020_0.839|GO:0043227_0.797|GO:0043231_0.777|GO:0005634_0.768|GO:0031974_0.664|GO:0031981_0.664|GO:0043233_0.664|GO:0070013_0.664|GO:0071944_0.636|GO:0005886_0.621|GO:0005654_0.614
|
IPR000253+105-131_105-134+|IPR008984+47-134+|IPR050923+35-132+
|
— |
PF00498+105-134+FHA_domain
|
— |
PTHR23308+35-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;188-237
|
2.000
|
65-187;238-395
|
4h87_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
45795.600
|
9.944
|
24.000
|
32.152
|
10.886
|
59.241
|
40.759
|
20.000
|
12.152
|
44.810
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
88.521
|
137.286
|
102.399
|
70.140
|
64.549
|
59.674
|
164.123
|
139.899
|
77.246
|
52.570
|
63.145
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.653
|
-1.106
|
-0.437
|
— | — |
1.470
|
1.125
|
0.372
|
— | — | — | — | — |
No JSON data available for plots.