Hg_chrom3_TN10mRNA_5400
Organism: Heterodera glycines Gene Locus: chr3:6039662-6043568 Feature type: polypeptideProtein Sequence
Length: 553
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 1.346 | 1.48 | 0.624 | 0.814 | 1.298 | 0.323 | 1.266 | 1.246 | 1.368 | 0.685 | 1.915 | 1.658 | 1.321 | 1.218 | 0.775 | 0.504 | 1.123 | 1.808 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5123
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.517
|
0.239
|
0.034
|
0.651
|
0.113
|
0.144
|
0.096
|
0.046
|
0.088
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003572
|
2.000
|
1.000
|
Hsc_gene_1148.t1
|
— | — |
Q09512.1 Tubulin--tyrosine ligase-like protein 12 [Caenorhabditis elegans]
|
KAI3415547.1 Tubulin--tyrosine ligase-like protein 12 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036211
|
GO:0008150_0.945|GO:0005575_0.885|GO:0110165_0.885|GO:0005622_0.825|GO:0016020_0.795|GO:0005737_0.779|GO:0071944_0.688|GO:0005886_0.684|GO:0003674_0.527|GO:0009987_0.518|GO:0043226_0.518|GO:0043229_0.512
|
IPR004344+243-553_296-456+|IPR027749+457-521+
|
— |
PF03133+296-456+Tubulin-tyrosine_ligase_family
|
— |
PTHR46088+457-521+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-553
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
64195.690
|
5.618
|
-7.000
|
26.040
|
13.201
|
45.389
|
54.611
|
13.020
|
13.020
|
47.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
828.912
|
1652.825
|
1074.636
|
568.782
|
529.193
|
522.397
|
1253.178
|
853.934
|
1021.110
|
440.053
|
689.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.851
|
-1.676
|
-0.809
|
— | — |
1.271
|
0.604
|
0.694
|
— | — | — | — | — |
No JSON data available for plots.