Hg_chrom3_TN10mRNA_5401
Organism: Heterodera glycines Gene Locus: chr3:6043811-6046561 Feature type: polypeptideProtein Sequence
Length: 668
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 0.696 | 0.871 | 0.361 | 2.246 | 1.881 | 0.713 | 0.898 | 0.699 | 1.072 | 1.474 | 1.233 | 0.956 | 0.864 | 1.344 | 0.855 | 0.908 | 0.658 | 0.806 | 0.572 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5124
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.441
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAR,KRRK,RRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.844
|
0.050
|
0.004
|
0.376
|
0.063
|
0.029
|
0.056
|
0.003
|
0.031
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001951
|
3.000
|
1.000
|
Hsc_gene_1147.t1
|
Hsc_gene_1147.t1
|
— |
Q9BWU0.2 Kanadaptin [Homo sapiens]
|
KAF7638320.1 FHA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.857|GO:0110165_0.855|GO:0005622_0.825|GO:0043226_0.788|GO:0016020_0.784|GO:0043229_0.765|GO:0043227_0.706|GO:0043231_0.664|GO:0008150_0.660|GO:0005634_0.630|GO:0009987_0.520
|
IPR000253+97-152_98-152_98-168+|IPR008984+40-177+|IPR050923+29-360+
|
SM00240+97-152+
|
PF00498+98-168+FHA_domain
|
— |
PTHR23308+29-360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-57;405-668
|
1.000
|
58-404
|
4h87_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
76753.040
|
5.705
|
-7.000
|
36.377
|
8.234
|
58.234
|
41.766
|
18.114
|
18.263
|
41.467
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1125.346
|
1442.832
|
1102.307
|
886.584
|
810.595
|
761.353
|
911.536
|
977.817
|
1577.815
|
1155.142
|
1336.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.618
|
-0.840
|
-0.205
|
-0.161
|
— |
0.271
|
0.256
|
— | — | — | — | — | — |
No JSON data available for plots.