Hg_chrom3_TN10mRNA_5404
Organism: Heterodera glycines Gene Locus: chr3:6054601-6057198 Feature type: polypeptideProtein Sequence
Length: 547
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 1.36 | 0.831 | 0.315 | 0.975 | 1.031 | 0.457 | 1.005 | 1.422 | 1.383 | 0.914 | 1.936 | 2.691 | 0.844 | 0.821 | 0.783 | 0.839 | 0.886 | 1.547 | 0.43 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-21
|
0.949
|
0.999
|
1.000
|
1.000
|
0.073
|
0.104
|
0.048
|
0.181
|
0.893
|
0.228
|
0.323
|
0.117
|
0.284
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007622
|
1.000
|
1.000
|
Hsc_gene_1144.t1
|
Hsc_gene_1144.t1
|
— |
Q21706.2 Putative UDP-glucuronosyltransferase ugt-47 [Caenorhabditis elegans]
|
KAI1700966.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.811|GO:0003674_0.763|GO:0003824_0.677|GO:0009987_0.639|GO:0016740_0.593|GO:0005575_0.569|GO:0110165_0.569|GO:0016757_0.564|GO:0008194_0.554|GO:0008152_0.516|GO:0016020_0.508|GO:0016758_0.507|GO:0050896_0.502
|
IPR002213+28-466_29-513+|IPR035595+371-414+|IPR050271+16-524+
|
— |
PF00201+29-513+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+293-469+UDP-glucuronosyltransferase
|
PTHR48043+16-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-547
|
8w7y_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
62627.610
|
7.055
|
3.500
|
22.486
|
15.174
|
42.962
|
57.038
|
12.066
|
10.420
|
44.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
466.581
|
101.710
|
691.771
|
260.855
|
268.411
|
229.822
|
336.225
|
926.765
|
269.866
|
783.059
|
563.119
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.537
|
1.222
|
-1.298
|
— | — |
0.559
|
1.913
|
-1.323
|
— | — | — | — | — |