SCN Proteipedia

Hg_chrom3_TN10mRNA_5405

Organism: Heterodera glycines Gene Locus: chr3:6058256-6059623 Feature type: polypeptide

Protein Sequence

Length: 229

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.711	1.422	0.794	1.807	0.655	1.12	0.728	0.655	1.164	0.649	1.059	1.541	2.426	0.504	1.961	1.31	0.931	0.728	0.672	0.385	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5128	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.952

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRAIMENRKYSCARKGKC,RKVGMIFTELNVERKRRVN	—	—	47-97	0.978	—	—	0.001	—	—	0.783	0.080	0.018	0.445	0.022	0.025	0.040	0.007	0.047	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001953	4.000	0.000	0.000	Hsc_gene_1143.t1;Hsc_gene_1143.t2	—	G5EEM0.1 Nuclear hormone receptor 114 [Caenorhabditis elegans]	KHN88456.1 Nuclear hormone receptor family member nhr-10 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.920\|GO:0065007_0.894\|GO:0050789_0.888\|GO:0009987_0.847\|GO:0050794_0.843\|GO:0003674_0.818\|GO:0008152_0.795\|GO:0009058_0.795\|GO:0009059_0.795\|GO:0043170_0.795\|GO:0044237_0.795\|GO:0044249_0.795\|GO:0010467_0.759\|GO:0019222_0.759\|GO:0031323_0.759\|GO:0005575_0.743\|GO:0110165_0.743\|GO:0060255_0.741\|GO:0009889_0.736\|GO:0031326_0.736\|GO:0010556_0.733\|GO:0005488_0.731\|GO:0043226_0.709\|GO:0005622_0.706\|GO:0044238_0.702\|GO:0043229_0.700\|GO:0006139_0.697\|GO:0010468_0.696\|GO:0080090_0.683\|GO:0097159_0.668\|GO:0034654_0.667\|GO:0090304_0.666\|GO:0016070_0.664\|GO:0141187_0.661\|GO:0003676_0.654\|GO:0032774_0.652\|GO:0019219_0.641\|GO:0006351_0.624\|GO:0051252_0.614\|GO:2001141_0.611\|GO:0006355_0.605\|GO:0003677_0.590\|GO:0043565_0.587\|GO:0003690_0.522\|GO:1990837_0.516\|GO:0032501_0.511	IPR001628+52-123_52-127_54-120_55-71_55-81_71-86_104-112_112-120+\|IPR013088+46-145+\|IPR049636+55-120+\|IPR050274+51-167+	SM00399+52-123+	PF00105+54-120+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+47-150+Nuclear_Hormone_Receptor_family	PTHR24083+51-167+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-229	3e00_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.605	26151.010	10.340	20.500	26.201	12.227	51.528	48.472	17.904	8.297	50.218

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	170.023	15.454	97.890	15.869	10.889	6.689	7.794	39.168	51.633	632.469	383.539

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.436	—	-2.518	—	—	—	2.448	-2.189	—	—	—	—	—

No JSON data available for plots.

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