Hg_chrom3_TN10mRNA_5408
Organism: Heterodera glycines Gene Locus: chr3:6067114-6069544 Feature type: polypeptideProtein Sequence
Length: 344
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.014 | 0.74 | 1.303 | 1.696 | 1.789 | 0.588 | 1.017 | 1.098 | 1.453 | 1.63 | 1.197 | 1.615 | 0.28 | 1.009 | 0.872 | 0.667 | 0.573 | 0.447 | 0.427 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-Not_Clustered
|
0.560
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— |
KKKK,KKYKEYFKCFSKREEFKKK
|
10-30
|
0.997
|
— | — |
1-22
|
0.977
|
1.000
|
0.000
|
1.000
|
0.351
|
0.192
|
0.033
|
0.409
|
0.192
|
0.416
|
0.417
|
0.005
|
0.481
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007624
|
1.000
|
1.000
|
Hsc_gene_1141.t1
|
Hsc_gene_1141.t1
|
— | — | — |
RTZ96824
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
314-344
|
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
39488.400
|
8.175
|
8.500
|
31.977
|
9.884
|
53.488
|
46.512
|
17.733
|
14.244
|
39.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
794.376
|
62.113
|
259.505
|
326.168
|
174.491
|
39.865
|
25.908
|
39.063
|
2748.087
|
1066.664
|
1787.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.832
|
2.254
|
0.438
|
-0.933
|
-2.116
|
-0.616
|
— | — | — |
-2.944
|
— | — | — |