Hg_chrom3_TN10mRNA_5411
Organism: Heterodera glycines Gene Locus: chr3:6079937-6083759 Feature type: polypeptideProtein Sequence
Length: 404
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 0.863 | 1.35 | 0.256 | 1.031 | 0.762 | 1.002 | 1.609 | 1.1 | 1.137 | 0.863 | 1.31 | 1.788 | 0.904 | 1.061 | 1.167 | 0.649 | 0.863 | 1.714 | 1.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.188
|
0.110
|
0.013
|
0.181
|
0.732
|
0.458
|
0.694
|
0.011
|
0.140
|
0.272
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007627
|
1.000
|
1.000
|
Hsc_gene_1137.t2
|
Hsc_gene_1137.t1;Hsc_gene_1137.t2;Hsc_gene_1137.t3
|
— |
Q19202.2 Apyrase apy-1 [Caenorhabditis elegans]
|
KAH7728165.1 calcium activated nucleotidase 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0017110
|
GO:0008150_0.773|GO:0005575_0.740|GO:0110165_0.740|GO:0009987_0.695|GO:0016020_0.669|GO:0008152_0.646|GO:0005622_0.634|GO:0044238_0.615|GO:0044237_0.603|GO:0003674_0.552
|
IPR009283+38-401_108-401+|IPR036258+71-403_82-402+
|
— |
PF06079+108-401+Apyrase
|
G3DSA:2.120.10.100:FF:000001+74-404+Soluble_calcium-activated_nucleotidase_1
|
PTHR13023+38-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26
|
1.000
|
27-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
45955.750
|
5.907
|
-4.500
|
27.723
|
16.089
|
46.535
|
53.465
|
14.109
|
13.614
|
48.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
1967.733
|
867.815
|
984.868
|
1238.528
|
1795.809
|
1887.902
|
2701.384
|
1419.665
|
852.500
|
3883.468
|
2584.482
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.376
|
0.439
|
0.504
|
— |
0.527
|
-0.515
|
1.070
|
— | — | — | — | — |
No JSON data available for plots.