Hg_chrom3_TN10mRNA_5412
Organism: Heterodera glycines Gene Locus: chr3:6084171-6087225 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 1.214 | 0.504 | 0.844 | 0.625 | 0.837 | 0.777 | 0.897 | 1.74 | 1.323 | 0.791 | 2.591 | 1.767 | 1.035 | 0.666 | 1.282 | 0.936 | 0.816 | 1.255 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5135
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
GKRPPKKKKSRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.090
|
0.088
|
0.014
|
0.150
|
0.320
|
0.280
|
0.268
|
0.070
|
0.762
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003575
|
1.000
|
2.000
|
Hsc_gene_1136.t1;Hsc_gene_1136.t2
|
Hsc_gene_1136.t1;Hsc_gene_1136.t2
|
— |
Q652N5.1 Probable anion transporter 4, chloroplastic [Oryza sativa Japonica Group]
|
KAI1722102.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.960|GO:0009987_0.888|GO:0005575_0.855|GO:0110165_0.855|GO:0003674_0.802|GO:0051179_0.787|GO:0006810_0.781|GO:0051234_0.781|GO:0016020_0.770|GO:0055085_0.712|GO:0071944_0.679|GO:0005215_0.667|GO:0022857_0.667|GO:0005886_0.657|GO:0005622_0.575|GO:0043226_0.554|GO:0043229_0.534|GO:0015711_0.514|GO:0005737_0.510
|
IPR011701+173-527+|IPR020846+128-569+|IPR036259+110-565_117-332_372-574+
|
— |
PF07690+173-527+Major_Facilitator_Superfamily
|
— |
PTHR45757+101-588+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-108
|
1.000
|
109-613
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
67566.010
|
8.817
|
17.500
|
16.803
|
11.909
|
39.967
|
60.033
|
10.277
|
6.525
|
50.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
208.021
|
149.582
|
607.805
|
330.122
|
226.943
|
115.339
|
75.557
|
599.509
|
33.095
|
95.950
|
69.012
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.795
|
1.004
|
-0.773
|
-0.572
|
-0.962
|
-0.601
|
2.273
|
-2.847
|
— | — | — | — | — |
No JSON data available for plots.